y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb09g030140.1 |
Family | GH28 |
Protein Properties | Length: 440 Molecular Weight: 46624.9 Isoelectric Point: 8.0657 |
Chromosome | Chromosome/Scaffold: 9 Start: 58769541 End: 58771425 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 413 | 0 |
GGTLLYVPPGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLIDPLPSYGRGRELPGGRYMSLIHGNGLQDVFITGENGTIDGQGSLWWDMWKKRTLP FTRPHLLELMYSTDVVVSNVVFQDSPFWNIHPVYCSNVVIANVTVLAPHDSPNTDGIDLDSSSNVCIEDSYISAGDDLISIKSGWDEYGIAFGRPSSGIT IRRITGSGPFAGFAVGSETSGGVENVLVEHLNLFGMGVGIHIKTNSGRGGFIRNITVSEVTLNGARYGLRIAGDVGGHPDASYNPSVLPVVNSVTIKNVL GQNIRQAGLIRGIRNSVFSNICLSNVKLYGSASIGPWKCRAV |
Full Sequence |
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Protein Sequence Length: 440 Download |
MPPALRLLVA TALLLLSSSA GAQDSCWSGP APLRGAWMSV ASFGARGDGQ TLNTGAFARA 60 VARIERRRGA RGGTLLYVPP GVWLTGPFNL TSHMTLFLAR GAVIRATQDT SSWPLIDPLP 120 SYGRGRELPG GRYMSLIHGN GLQDVFITGE NGTIDGQGSL WWDMWKKRTL PFTRPHLLEL 180 MYSTDVVVSN VVFQDSPFWN IHPVYCSNVV IANVTVLAPH DSPNTDGIDL DSSSNVCIED 240 SYISAGDDLI SIKSGWDEYG IAFGRPSSGI TIRRITGSGP FAGFAVGSET SGGVENVLVE 300 HLNLFGMGVG IHIKTNSGRG GFIRNITVSE VTLNGARYGL RIAGDVGGHP DASYNPSVLP 360 VVNSVTIKNV LGQNIRQAGL IRGIRNSVFS NICLSNVKLY GSASIGPWKC RAVSGAALDV 420 QPSPCTELAS TSETGFCTS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-24 | 38 | 375 | 354 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 5.0e-25 | 40 | 426 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 8.0e-27 | 151 | 430 | 292 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 144 | 410 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 38 | 380 | 386 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT44156.1 | 0 | 32 | 439 | 42 | 474 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EAY99223.1 | 0 | 32 | 439 | 42 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001056466.1 | 0 | 32 | 439 | 42 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149385.1 | 0 | 21 | 438 | 27 | 446 | LOC100283011 [Zea mays] |
RefSeq | XP_002441600.1 | 0 | 1 | 439 | 1 | 439 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5e-40 | 38 | 403 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-40 | 38 | 403 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-40 | 38 | 403 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-40 | 38 | 403 | 28 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 6e-17 | 82 | 333 | 51 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |