y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01028246001 |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 51669.5 Isoelectric Point: 5.2318 |
Chromosome | Chromosome/Scaffold: 7 Start: 4908103 End: 4912003 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 418 | 0 |
ADKGGAQLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSMNSNDWPVIDPLPSYGRGRELPGRRHRSLIYGCNLTDVIVTGDNGTIDGQGSIWWNWFQKK TLNYTRPHLVEFINSTGVVISNVTFLNSPFWTIHPVYCSQVIIQNVTILAPLDSPNTDGIDPDSSNDVCIEDCYISTGDDLIAIKSGWDEYGISYARPST NIIIRRLVGKTNSSAGIAIGSEMSGGVSEVHAESLQFFNSKTGIRIKTSPGRGGYVRNIYISDMNLVDVKIAIRFTGQYGEHPDEFYDPTALPIIENITV KDVMGENIKFAGLLEGIEGDNFVNICLSNITLNVTSESPWNCSYIH |
Full Sequence |
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Protein Sequence Length: 467 Download |
MRRFFTLVDV LLVLLLFSEA PWAVWGSPHC DQTSSGVIRP HSVAITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAQL FVPAGRWLTG SFDLISHLTL WLDKDAVILG SMNSNDWPVI 120 DPLPSYGRGR ELPGRRHRSL IYGCNLTDVI VTGDNGTIDG QGSIWWNWFQ KKTLNYTRPH 180 LVEFINSTGV VISNVTFLNS PFWTIHPVYC SQVIIQNVTI LAPLDSPNTD GIDPDSSNDV 240 CIEDCYISTG DDLIAIKSGW DEYGISYARP STNIIIRRLV GKTNSSAGIA IGSEMSGGVS 300 EVHAESLQFF NSKTGIRIKT SPGRGGYVRN IYISDMNLVD VKIAIRFTGQ YGEHPDEFYD 360 PTALPIIENI TVKDVMGENI KFAGLLEGIE GDNFVNICLS NITLNVTSES PWNCSYIHGY 420 SDLVSPEACE PLGERIYPGH VLDCYHLPTH LWSMSNRKRS SWLRSW* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-25 | 40 | 377 | 346 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-26 | 41 | 408 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 8.0e-29 | 41 | 345 | 315 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-31 | 147 | 377 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-63 | 34 | 342 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 466 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 6 | 466 | 57 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 434 | 1 | 426 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 17 | 466 | 27 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-19 | 87 | 418 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |