y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000515489 |
Family | GH28 |
Protein Properties | Length: 343 Molecular Weight: 38333 Isoelectric Point: 7.6136 |
Chromosome | Chromosome/Scaffold: 013955379 Start: 6072 End: 9304 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 15 | 303 | 0 |
GPRFGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYXQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNITVRNVTILAPVLEAPNTDGI DPDSCEDMVIEDCYISVGDDXIAIKSGWDQYGISYGRPSKNILIRNLVVRSMVSAGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVRQIT YRNLTFDNVRVGIVIKTDYNEHPDEGYDRKALPVLEDISFTSVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 343 Download |
MPPLPSYGYG REHHGPRFGS LIHGQNLKDI VITGHNGTIN GQGQTWWKKY XQKLLNNTRG 60 PLVQIMWSSD ILISNITLRD SPFWTLHPYD CKNITVRNVT ILAPVLEAPN TDGIDPDSCE 120 DMVIEDCYIS VGDDXIAIKS GWDQYGISYG RPSKNILIRN LVVRSMVSAG VSIGSEMSGG 180 VSNVTVENLL VWSSRRAVRI KTAPGRGGYV RQITYRNLTF DNVRVGIVIK TDYNEHPDEG 240 YDRKALPVLE DISFTSVHGQ GVRVPVRIHG SEEIPVRNVT FRDMSVGLTY KKKHIFQCAF 300 VQGRVIGTIF PAPCENLDRY DEQGKLVNHS ASQNMTDIDY DF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-21 | 34 | 233 | 207 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-24 | 23 | 333 | 320 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-31 | 26 | 286 | 268 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-37 | 22 | 293 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-46 | 20 | 237 | 226 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 342 | 152 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 342 | 152 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 342 | 154 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 342 | 154 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 342 | 153 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-37 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-37 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-37 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-37 | 59 | 283 | 189 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-17 | 37 | 281 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FN769574 | 317 | 1 | 317 | 0 |
HO778855 | 298 | 1 | 298 | 0 |
JK989090 | 297 | 47 | 343 | 0 |
FG528363 | 284 | 47 | 330 | 0 |
ES913671 | 288 | 30 | 317 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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