y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000147794 |
Family | GH28 |
Protein Properties | Length: 541 Molecular Weight: 59185 Isoelectric Point: 6.319 |
Chromosome | Chromosome/Scaffold: 005665223 Start: 25690 End: 29070 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 159 | 504 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEAGAIILGSQDYAHWEIVEPLPSYGRGIDFPGWRYRSXINGDNLTDVMITGDNGTIDGQGFVWWEQFSYHA LNYSRPHLVEFTRCENVTVSNXTLLNSPAWHIHPTYCRNVQVLNITLHASPASPXTSGVVPDSSEHVCIENCNISMGHDAIVLKSGWDEYGIAFGKPTXN VHIRGVNLQSSLGSGLAFGSEMSGGISNVRVEQLRLHDSFIGIALKTAMGRGGYMKDIVISNVEXENIXLAIEATGQIGLHPDEKYDPDELPVVKGITFE NMVGTNVTLAGNFSGLEKSPFTSICLSNISFALTWNSSTSWFCSNV |
Full Sequence |
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Protein Sequence Length: 541 Download |
MAQILAKQVT TQHKGQTITH RGADEGGPTH DGTSGCNLAL WQLGLTPASQ YRHITDITVP 60 PPHPRGFWGP RLCRKDMICV GNRGGLIQFL YLLALVLILA FTSAEYDGEG KDRECEGKKL 120 FDPRPHSVSL LEFGAVGDGK TLNTVAFQNA IFYVKSFADK GGAQLYVPPG RWLTGSFNLT 180 SHLTLFLEAG AIILGSQDYA HWEIVEPLPS YGRGIDFPGW RYRSXINGDN LTDVMITGDN 240 GTIDGQGFVW WEQFSYHALN YSRPHLVEFT RCENVTVSNX TLLNSPAWHI HPTYCRNVQV 300 LNITLHASPA SPXTSGVVPD SSEHVCIENC NISMGHDAIV LKSGWDEYGI AFGKPTXNVH 360 IRGVNLQSSL GSGLAFGSEM SGGISNVRVE QLRLHDSFIG IALKTAMGRG GYMKDIVISN 420 VEXENIXLAI EATGQIGLHP DEKYDPDELP VVKGITFENM VGTNVTLAGN FSGLEKSPFT 480 SICLSNISFA LTWNSSTSWF CSNVIGFSQE VSPKPCSNLR XSAFNSSSXC FFPLYNYASV 540 L 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-22 | 125 | 488 | 383 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-23 | 124 | 516 | 421 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-25 | 226 | 516 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-25 | 126 | 513 | 405 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 3.0e-53 | 128 | 426 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 103 | 516 | 14 | 427 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 103 | 541 | 37 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 103 | 541 | 102 | 542 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 103 | 516 | 16 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516982.1 | 0 | 108 | 531 | 19 | 440 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-40 | 126 | 486 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-40 | 126 | 486 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-40 | 126 | 486 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-40 | 126 | 486 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000001 | 172 | 430 | 52 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |