y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s294_11V6.1 |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 53261 Isoelectric Point: 4.9842 |
Chromosome | Chromosome/Scaffold: 294 Start: 44123 End: 48536 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 463 | 0 |
DKGGVQLYIPAGRWLTGSIKLISHLTLFLENEATILGSQDLNDYPVIPGLPSYGRGRELPGPRHRSLINGEGLEDVVITGDNGTIDGQGAVWWNAFQNKT LDYTRGHLVELIDSKDILISNLTFRDSPFWTIHPVYCRNVVVKDMTLLAPLNSPNTDGIDPDSSQYVCIEDCYISVGDDAIAIKSGWDEYGTAYGMPSQH IDIRRIVVHSETSAGIAFGSEMSGGISDVKVDHMMIFGARWGIRFKTGPGRGGYIRNITVDNVNMRSVNTAIAFTGNYGEHPDENWNRTDYPVIENVLIE NIVGEDITHAGLFLGLPESPFLNIHLANIALDTKSESEDWNCSSVAG |
Full Sequence |
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Protein Sequence Length: 484 Download |
MMRRLSCRGL PVLLLLLLLT YLSADHCHQT CTSGHPLHVG SSELASDGGV EITTSSTGYK 60 NILESVETDV SCASKYKNWK NRPHSVSISE FGAVGDGKTL NTHAFENAMF YLRTYADKGG 120 VQLYIPAGRW LTGSIKLISH LTLFLENEAT ILGSQDLNDY PVIPGLPSYG RGRELPGPRH 180 RSLINGEGLE DVVITGDNGT IDGQGAVWWN AFQNKTLDYT RGHLVELIDS KDILISNLTF 240 RDSPFWTIHP VYCRNVVVKD MTLLAPLNSP NTDGIDPDSS QYVCIEDCYI SVGDDAIAIK 300 SGWDEYGTAY GMPSQHIDIR RIVVHSETSA GIAFGSEMSG GISDVKVDHM MIFGARWGIR 360 FKTGPGRGGY IRNITVDNVN MRSVNTAIAF TGNYGEHPDE NWNRTDYPVI ENVLIENIVG 420 EDITHAGLFL GLPESPFLNI HLANIALDTK SESEDWNCSS VAGTYFFVWP QPCPDFTKEE 480 LKT* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-24 | 80 | 474 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-25 | 84 | 451 | 375 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-29 | 83 | 445 | 379 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-30 | 177 | 424 | 253 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-58 | 86 | 454 | 407 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001755533.1 | 0 | 82 | 473 | 1 | 393 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001756010.1 | 0 | 73 | 481 | 10 | 421 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775589.1 | 0 | 24 | 479 | 25 | 479 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001779181.1 | 0 | 82 | 473 | 1 | 392 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781065.1 | 0 | 66 | 483 | 29 | 446 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-39 | 84 | 448 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-39 | 84 | 448 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-39 | 84 | 448 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-39 | 84 | 448 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 2e-16 | 57 | 422 | 124 | 536 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |