y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si013629m |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 52859.1 Isoelectric Point: 6.7829 |
Chromosome | Chromosome/Scaffold: 6 Start: 486238 End: 490183 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 468 | 0 |
GARLEVPPGRWLTGSFNLTSRFTLFLHRGAVILGSQDPEEWPLIAPLPSYGRGRERLGPRHISLIHGEGLNDVVVTGNNGTIDGQGGMWWELWWNRTLNH TRGHLVELVNSSNILISNITLRNSPFWTVHPVYCSNVVMKDLTILAPLNAPNTDGIDPDSSSEVCIEDCYIESGDDLVAIKSGWDQYGISVGKPSTNIVI QRVSGTTPTCSGVGFGSEMSGGISNVLVRDLHVWSSAQAVRLKTDIGRGGYITNITIVNVTMEKVKVPIRFSRGADDHSDDNYDRTALPRISNVLISDIV GVDLQRAPMLEAVAGAVYEGICFRNVSLRGIRRQDRWHCESVY |
Full Sequence |
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Protein Sequence Length: 495 Download |
MVMAHAKPTA HETLPPPLRL LVLLALLAAS YLALTRIPAA APLSALLIGR QPLPPPLSAP 60 PAPLLSSKSS SCAGFYAGAG PARAVAASVE EFGAVGDGVT SNTAAFRRAV ADLEERARGV 120 GGGGGGARLE VPPGRWLTGS FNLTSRFTLF LHRGAVILGS QDPEEWPLIA PLPSYGRGRE 180 RLGPRHISLI HGEGLNDVVV TGNNGTIDGQ GGMWWELWWN RTLNHTRGHL VELVNSSNIL 240 ISNITLRNSP FWTVHPVYCS NVVMKDLTIL APLNAPNTDG IDPDSSSEVC IEDCYIESGD 300 DLVAIKSGWD QYGISVGKPS TNIVIQRVSG TTPTCSGVGF GSEMSGGISN VLVRDLHVWS 360 SAQAVRLKTD IGRGGYITNI TIVNVTMEKV KVPIRFSRGA DDHSDDNYDR TALPRISNVL 420 ISDIVGVDLQ RAPMLEAVAG AVYEGICFRN VSLRGIRRQD RWHCESVYGE AHGVFPAPCE 480 EFRSNGSSSW CGFS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-20 | 195 | 479 | 307 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-20 | 89 | 487 | 419 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-25 | 89 | 426 | 354 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-29 | 197 | 467 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-53 | 88 | 404 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ05322.1 | 0 | 71 | 494 | 63 | 482 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
GenBank | EAZ41253.1 | 0 | 71 | 494 | 63 | 482 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
RefSeq | NP_001060796.1 | 0 | 71 | 494 | 63 | 482 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148255.1 | 0 | 22 | 493 | 32 | 492 | polygalacturonase [Zea mays] |
RefSeq | XP_002443718.1 | 0 | 15 | 493 | 26 | 496 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.99995e-41 | 81 | 457 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.99995e-41 | 81 | 457 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.99995e-41 | 81 | 457 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.99995e-41 | 81 | 457 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-17 | 205 | 394 | 117 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |