y
Basic Information | |
---|---|
Species | Arabidopsis thaliana |
Cazyme ID | AT4G23500.1 |
Family | GH28 |
Protein Properties | Length: 496 Molecular Weight: 54690.8 Isoelectric Point: 5.7205 |
Chromosome | Chromosome/Scaffold: 4 Start: 12264590 End: 12267196 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 100 | 446 | 0 |
YGGSLLFVPAGRWLTGNFNLTSHFTLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGEL KYTRPYLIEIMHSDGIQISNLTFLNSPSWHIHPVYSSNIYIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGINYGMPTKQL LIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYVKDVYVRGMTMMTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQD MVAENVTMPAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVS |
Full Sequence |
---|
Protein Sequence Length: 496 Download |
MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA 60 ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY GGSLLFVPAG RWLTGNFNLT 120 SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN 180 GTIDGQGEPW WGKFKRGELK YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI 240 QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL 300 IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG 360 MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM VAENVTMPAQ LAGISGDQFT 420 GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI 480 DEVKLQRCYS RRRNM* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-17 | 72 | 367 | 311 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-21 | 67 | 367 | 313 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 7.0e-25 | 66 | 363 | 306 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-27 | 130 | 458 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-53 | 57 | 363 | 330 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005618 | cell wall |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91278.1 | 0 | 2 | 495 | 3 | 494 | glycoside hydrolase family 28 protein [Capsella rubella] |
RefSeq | NP_194081.1 | 0 | 1 | 495 | 1 | 495 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002278930.1 | 0 | 48 | 488 | 33 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 48 | 494 | 33 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 56 | 493 | 41 | 478 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.99993e-41 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.99993e-41 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.99993e-41 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.99993e-41 | 67 | 433 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000001 | 112 | 403 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |