y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_003930m |
Family | CE8 |
Protein Properties | Length: 607 Molecular Weight: 66637.6 Isoelectric Point: 9.1401 |
Chromosome | Chromosome/Scaffold: 06916 Start: 1343703 End: 1346881 |
Description | pectin methylesterase PCR fragment F |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 292 | 588 | 0 |
DIIVSNDGNGTYKTIAEAIKKAPEYSNRRTIIYVRAGRYEENNLKVGRKKRNLMFIGDGKGKTVISGSKSIFDNVTTFHTASFAATGAGFIARDMTFENW AGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIHARKPMAFQKNTITAQNRKDPNQNTGISIHACRL YATPELEAAKASFPTYLGRPWKLYSRTVYMLTYMGDHIHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVKWPGYRVITSTVEASKFTVAQFIY |
Full Sequence |
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Protein Sequence Length: 607 Download |
MKPLNYGRLG PSEPGGSSRS LDQSQFTNSH PSPSRKRKVI LLSLLSAALI IASAVSATLL 60 IGLRTRASDH STPVVARKPT KAISKTCSKT RFPTLCVNSL LDFPGSTTAS EKDLVHISFN 120 MTLQHFTKAL YLSSGISYLQ MDTRVRSAYD DCLELLDDSV DALSRSLSIV APSMDGNPAG 180 QVQSIGSTED VVTWLSAALT NHDTCTEGFT DLNGAVKDQM SDKLKDLSEL VSNCLAIFSG 240 TDSDDFSGVP IQNRRRLMDA EISKENADDL PSWLGRNERR LLNVPVSAIQ ADIIVSNDGN 300 GTYKTIAEAI KKAPEYSNRR TIIYVRAGRY EENNLKVGRK KRNLMFIGDG KGKTVISGSK 360 SIFDNVTTFH TASFAATGAG FIARDMTFEN WAGPAKHQAV ALRVGADHAV VYRCNIIGYQ 420 DTLYVHSNRQ FFRECDIYGT VDFIFGNAAV VFQNCSIHAR KPMAFQKNTI TAQNRKDPNQ 480 NTGISIHACR LYATPELEAA KASFPTYLGR PWKLYSRTVY MLTYMGDHIH PRGWLEWNAT 540 FALDTLYYGE YMNYGPGGAV GQRVKWPGYR VITSTVEASK FTVAQFIYGS SWLPSTGVAF 600 LAGLSV* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 7.0e-177 | 64 | 600 | 546 | + pectinesterase | ||
PLN02484 | PLN02484 | 0 | 4 | 606 | 605 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 292 | 590 | 299 | + Pectinesterase. | ||
PLN02301 | PLN02301 | 0 | 79 | 604 | 529 | + pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 0 | 118 | 606 | 490 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABJ99594.1 | 0 | 29 | 606 | 12 | 580 | pectinesterase inhibitor [Lycoris aurea] |
DDBJ | BAF42038.1 | 0 | 4 | 606 | 1 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | XP_002278061.1 | 0 | 75 | 606 | 68 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 62 | 604 | 14 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 4 | 606 | 1 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 287 | 604 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 289 | 604 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 7e-21 | 296 | 595 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-21 | 296 | 595 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-20 | 296 | 595 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |