y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra001547 |
Family | CE8 |
Protein Properties | Length: 592 Molecular Weight: 64220.8 Isoelectric Point: 7.5574 |
Chromosome | Chromosome/Scaffold: 03 Start: 16958823 End: 16964985 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 281 | 575 | 0 |
ATVAADGSGTFTTVAAAVAAAPENSNKRYVIHIKAGVYRENVDVAKKKKNIMFMGDGRTTTIITASRNAVDGWPTFSSATVAVVGERFLARDITFQNTAG PSKEQAVALRVGSDFSAFYQCDMLAYQDTLYVHSNRQFFVNCLIVGTVDFIFGNAAVVLQDCDIHARRPGPGQKNMVTAQGRTDPNQNTGIVIQNCRIGA TSDLLSVKSSFPTYLGRPWKEYSHTVIMQSDISDVIRPEGWFEWSGTFALNTLTYREYANTGAGAGTGDRVKWKDFKVITDAAEAEPYTAGQFIG |
Full Sequence |
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Protein Sequence Length: 592 Download |
MASSIKEIFS KDNFSKNKKL VLLSATVALL LVTAIAGITV GASKANENGK RTLTPSSHAV 60 LTSACISTRY PELCISAVAT SGGVELTSQK DVIEASLNLT KTVVEHNYFT VKKLIKKRKG 120 LTPREKTALH DCLETIDETL DELHEAVEDL HLYPNKKSLR EHAGDLKTLI SSAITNQETC 180 LDGFSHDGAD KKVRKALFKG QMHVEHMCSN ALAMIKNMTD TDITNFELKA KFTSNNRKLK 240 EETTVAVDMA SVGDLDAEGW PTWLSAGDRR LLQGSTVEAD ATVAADGSGT FTTVAAAVAA 300 APENSNKRYV IHIKAGVYRE NVDVAKKKKN IMFMGDGRTT TIITASRNAV DGWPTFSSAT 360 VAVVGERFLA RDITFQNTAG PSKEQAVALR VGSDFSAFYQ CDMLAYQDTL YVHSNRQFFV 420 NCLIVGTVDF IFGNAAVVLQ DCDIHARRPG PGQKNMVTAQ GRTDPNQNTG IVIQNCRIGA 480 TSDLLSVKSS FPTYLGRPWK EYSHTVIMQS DISDVIRPEG WFEWSGTFAL NTLTYREYAN 540 TGAGAGTGDR VKWKDFKVIT DAAEAEPYTA GQFIGGGGWL ASTGFPFSLG L* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 3.0e-163 | 124 | 591 | 473 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 3.0e-166 | 35 | 591 | 561 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-177 | 52 | 591 | 545 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 1 | 591 | 596 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 280 | 576 | 297 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC50023.1 | 0 | 7 | 591 | 1 | 582 | ATPME2 precursor [Arabidopsis thaliana] |
GenBank | AAC72288.1 | 0 | 1 | 591 | 1 | 592 | putative pectin methylesterase [Arabidopsis thaliana] |
EMBL | CAB95025.1 | 0 | 51 | 591 | 52 | 579 | pectin methylesterase [Nicotiana tabacum] |
RefSeq | NP_175786.1 | 0 | 5 | 591 | 4 | 587 | ATPME2; pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_188048.1 | 0 | 1 | 591 | 1 | 592 | ATPME3; pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 273 | 591 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 279 | 591 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-28 | 284 | 575 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-28 | 284 | 575 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 6e-28 | 284 | 575 | 12 | 335 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |