y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.012G014500.1 |
Family | CE8 |
Protein Properties | Length: 603 Molecular Weight: 65713.4 Isoelectric Point: 8.4406 |
Chromosome | Chromosome/Scaffold: 12 Start: 1427360 End: 1431423 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 288 | 584 | 0 |
DIIVSGDGSGTFKTISEAIKKAPEHSNRRTIIYVRAGRYVEDNLKVGRKKWNLMFIGDGMGKTIITGSRSVFNHITTFHTASFAATGAGFIARDMTFENW AGPAKHQAVALRVGADHAVVYRCSIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQNCSIYARKPMASQKNTITAQNRKDPNQNTGISIHACKI LAASDLAPSKGTFPTYLGRPWKLYSRTVYMLSFMGDHIHPRGWLEWDASFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSTVEANKFTVAQFIY |
Full Sequence |
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Protein Sequence Length: 603 Download |
MGYGRLGRKE SDPGEGSSNS FTINQPQHAT SQVSPTRKKK IIFLTIFSVV LIAASAASAA 60 ILLGVRDKAS GQSDPNSLTH RKPTQAISKA CSKTRFPALC VSSLLDFPGS MTASESDLVH 120 ISFNMTLLHL DKALYLSSGI SYVNMETHER SAFDDCLELL EDSIDALTRS LSTVSPSSGG 180 GGSPEDVVTW LSAALTNQDT CSEGFEGVNG TVKDQMTEKL KDLTELVSNC LAIFSATNGG 240 DFSGVPIQNK RRLMTEDGDI SEEDNFPSWL GRRERRLLGL PVSAIQADII VSGDGSGTFK 300 TISEAIKKAP EHSNRRTIIY VRAGRYVEDN LKVGRKKWNL MFIGDGMGKT IITGSRSVFN 360 HITTFHTASF AATGAGFIAR DMTFENWAGP AKHQAVALRV GADHAVVYRC SIIGYQDTLY 420 VHSNRQFYRE CDIYGTVDFI FGNAAVVLQN CSIYARKPMA SQKNTITAQN RKDPNQNTGI 480 SIHACKILAA SDLAPSKGTF PTYLGRPWKL YSRTVYMLSF MGDHIHPRGW LEWDASFALD 540 TLYYGEYMNY GPGAAVGQRV KWPGYRVITS TVEANKFTVA QFIYGSSWLP STGVAFLAGL 600 SV* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02506 | PLN02506 | 1.0e-178 | 84 | 601 | 526 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 602 | 603 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 288 | 586 | 299 | + Pectinesterase. | ||
PLN02301 | PLN02301 | 0 | 22 | 600 | 581 | + pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 0 | 122 | 602 | 485 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 80 | 602 | 82 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_190491.1 | 0 | 81 | 602 | 81 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 80 | 602 | 69 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 51 | 600 | 1 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 1 | 602 | 1 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 283 | 600 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 285 | 600 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-20 | 292 | 558 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-20 | 292 | 558 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-20 | 292 | 558 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |