y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra007425 |
Family | CE8 |
Protein Properties | Length: 522 Molecular Weight: 56681.4 Isoelectric Point: 8.4622 |
Chromosome | Chromosome/Scaffold: 09 Start: 29142922 End: 29144981 |
Description | pectin methylesterase 61 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 221 | 505 | 0 |
AVVAADGSGTHMSVGEALASLEKGSGRSVIHLTAGTYKENLNIPSKQKNVMLVGDGKGKTVIVGSRSNRGGFNTYKSATVAAMGDGFIARDITFVNSAGP NAEQAVALRVGSDRSVVYRCSIDGYQDTLYTLSKRQFYRETDISGTVDFIFGNSAVVLQSCNIVSRKGSSDENYVTAQGRSDPNQNTGISIHNCRITGST GTYLGRPWKQYSRTVVMQSFLDGSIHPSGWSPWSSSNSLKSLFYGEFGNSGPGSSVSGRVDWPGYHPALTLTEAQGFTVSGFIDG |
Full Sequence |
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Protein Sequence Length: 522 Download |
MATTSSSLPN HKFRIKLLFI LTLNLFFLHT SVFANSSKFS KFSRHPNSES SSRRTKHSTS 60 DDEFLNSVQR SLEHALLAHS LALSLTLSHR TAQSVMLDPV NDCLELLDDT IDMLSRIVTK 120 PKDHVNDDDV HTWLSAALTN QETCKQSLSE KTSLNRDGIT IDSVARNLTG LLTKSLDMFV 180 STSRPETSGR KLLSRQDFPT WVSSSDRRLL EASVEELRPH AVVAADGSGT HMSVGEALAS 240 LEKGSGRSVI HLTAGTYKEN LNIPSKQKNV MLVGDGKGKT VIVGSRSNRG GFNTYKSATV 300 AAMGDGFIAR DITFVNSAGP NAEQAVALRV GSDRSVVYRC SIDGYQDTLY TLSKRQFYRE 360 TDISGTVDFI FGNSAVVLQS CNIVSRKGSS DENYVTAQGR SDPNQNTGIS IHNCRITGST 420 GTYLGRPWKQ YSRTVVMQSF LDGSIHPSGW SPWSSSNSLK SLFYGEFGNS GPGSSVSGRV 480 DWPGYHPALT LTEAQGFTVS GFIDGSSWLP STGVVFDSGL L* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 9.0e-132 | 100 | 520 | 454 | + pectinesterase | ||
PLN02484 | PLN02484 | 1.0e-138 | 101 | 520 | 447 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-147 | 102 | 520 | 440 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 3.0e-163 | 220 | 506 | 298 | + Pectinesterase. | ||
PLN02170 | PLN02170 | 0 | 2 | 521 | 529 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK69695.1 | 0 | 11 | 521 | 6 | 549 | putative pectin methylesterase LuPME1 [Linum usitatissimum] |
EMBL | CBI39447.1 | 0 | 190 | 521 | 99 | 431 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181833.1 | 0 | 4 | 521 | 3 | 517 | ATPMEPCRD; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_191460.1 | 0 | 1 | 521 | 1 | 529 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002527752.1 | 0 | 50 | 521 | 85 | 582 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 220 | 520 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 219 | 520 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 9e-18 | 220 | 477 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-18 | 220 | 477 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 9e-18 | 220 | 477 | 5 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |