y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra028257 |
Family | CE8 |
Protein Properties | Length: 541 Molecular Weight: 59679.4 Isoelectric Point: 9.7379 |
Chromosome | Chromosome/Scaffold: 01 Start: 19245363 End: 19247497 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 225 | 524 | 0 |
NVVVAKDGSGRFKTVQAAIDLAGRRKVTSGRFVIYVKRGIYQENINVRLNNDNIMLVGDGMRYTIITGGRSVKGGYTTYSSATAGIEGLHFIAKGITFRN TAGPAKGQAVALRSSSDLSIFYRCAMEGYQDTLMVHSQRQFYRECYIFGTIDFIFGNAAVVFQNCIILPRRPLHGQSNVITAQGRADPFQNTGISIQNSI IQPAADLKPVIRSVTTYLGRPWMKYSRTVILKTYLDSFVSPVGWSPWIKGSTYALDTLFYAEYKNIGPASSTRWRVRWKGFHVLNKASDASAFTVGKFIT |
Full Sequence |
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Protein Sequence Length: 541 Download |
MMHKISILSL HLLLVLCLHP LTTTADGNFT TGIDTWCDQT PYPDPCNHYF RRHNGYRLPT 60 HLSEFRVMLV EAAMDRAISA QDKLKMSGLN CTDCRKQAIL TDCIDLYGDT VLQLNRTLQG 120 LSPKAAGEPC TDVDAQTWLS TALTNTETCR RGSSDLNVSD FTTPIVSNTK ISHLISNCLA 180 VNGALLTTGN NDTTTTDDPK VFPAWVSRKE RRLLKLQSAP TVPANVVVAK DGSGRFKTVQ 240 AAIDLAGRRK VTSGRFVIYV KRGIYQENIN VRLNNDNIML VGDGMRYTII TGGRSVKGGY 300 TTYSSATAGI EGLHFIAKGI TFRNTAGPAK GQAVALRSSS DLSIFYRCAM EGYQDTLMVH 360 SQRQFYRECY IFGTIDFIFG NAAVVFQNCI ILPRRPLHGQ SNVITAQGRA DPFQNTGISI 420 QNSIIQPAAD LKPVIRSVTT YLGRPWMKYS RTVILKTYLD SFVSPVGWSP WIKGSTYALD 480 TLFYAEYKNI GPASSTRWRV RWKGFHVLNK ASDASAFTVG KFITGTAWLP RTGIPFSSGL 540 * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 4.0e-148 | 22 | 540 | 527 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 7.0e-152 | 93 | 540 | 451 | + pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 3.0e-152 | 35 | 540 | 542 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 3.0e-170 | 225 | 525 | 301 | + Pectinesterase. | ||
PLN02995 | PLN02995 | 0 | 1 | 540 | 543 | + Probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_190324.1 | 0 | 26 | 540 | 77 | 594 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_199962.1 | 0 | 17 | 540 | 22 | 536 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_199963.1 | 0 | 22 | 540 | 28 | 540 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264861.1 | 0 | 1 | 540 | 1 | 523 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
RefSeq | XP_002510939.1 | 0 | 31 | 540 | 29 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 221 | 540 | 4 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 224 | 540 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-18 | 225 | 468 | 5 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-18 | 225 | 468 | 5 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-18 | 225 | 468 | 5 | 279 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |