y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T151400.1 |
Family | CE8 |
Protein Properties | Length: 235 Molecular Weight: 25723.9 Isoelectric Point: 9.7132 |
Chromosome | Chromosome/Scaffold: 533 Start: 77 End: 781 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 5 | 218 | 0 |
AVVGQGFLARDITFQNTAGASKYQAVALRVESDFAAFYKCGMLAYQNTLYVHSNRQFFTNCYIAGTVDFIFGNSAAVFQDCDIHARRPNPGQTITITAQG RSDPNQNTGIVIQKSRIGATPDLQHARSNFSAYLGRPWKEYSRTVIMQSSISDVISPAGWREWKGRFALNTLHFAEYENSGAGAGTAGRVPWKGYKVITD ATEAQAFTARNFIT |
Full Sequence |
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Protein Sequence Length: 235 Download |
MNLAAVVGQG FLARDITFQN TAGASKYQAV ALRVESDFAA FYKCGMLAYQ NTLYVHSNRQ 60 FFTNCYIAGT VDFIFGNSAA VFQDCDIHAR RPNPGQTITI TAQGRSDPNQ NTGIVIQKSR 120 IGATPDLQHA RSNFSAYLGR PWKEYSRTVI MQSSISDVIS PAGWREWKGR FALNTLHFAE 180 YENSGAGAGT AGRVPWKGYK VITDATEAQA FTARNFITGS SWLKSTTFPF SLGL* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02916 | PLN02916 | 7.0e-102 | 6 | 234 | 229 | + pectinesterase family protein | ||
PLN02713 | PLN02713 | 7.0e-106 | 5 | 234 | 232 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-112 | 5 | 234 | 230 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 6.0e-128 | 5 | 234 | 230 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-146 | 5 | 220 | 216 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAC18726.1 | 0 | 5 | 234 | 345 | 574 | putative pectin methylesterase [Populus tremula x Populus tremuloides] |
EMBL | CAC18727.1 | 0 | 5 | 234 | 307 | 536 | putative pectin methylesterase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002331120.1 | 0 | 5 | 234 | 334 | 563 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 0 | 5 | 234 | 343 | 572 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331123.1 | 0 | 5 | 234 | 344 | 573 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 5 | 234 | 90 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 5 | 234 | 86 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-20 | 28 | 209 | 129 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-20 | 28 | 209 | 129 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 8e-20 | 28 | 209 | 129 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV262571 | 227 | 9 | 235 | 0 |
CV267349 | 228 | 8 | 235 | 0 |
CK096353 | 219 | 17 | 235 | 0 |
DT523930 | 231 | 5 | 235 | 0 |
CX669280 | 231 | 5 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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