y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G268900.1 |
Family | CE8 |
Protein Properties | Length: 601 Molecular Weight: 65607.4 Isoelectric Point: 8.6216 |
Chromosome | Chromosome/Scaffold: 08 Start: 54744297 End: 54747230 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 286 | 582 | 0 |
DITVSKDGSGTVKTIAEAIKKAPEHSTRRIIIYVKAGRYEEDNLKVGRKKINLMFIGDGKGKTVITGGKSVAEHMTTFHTAAFAATGAGFIARDMTFENY AGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDVYGTVDFIFGNAAVVLQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHACRI IPTQDLAAAKSSFPTYLGRPWKLYSRTVYMLSYMGNHVHSRGWLEWSGTFALDTLYYGEYMNSGPGAAVGQRVRWPGYRVITSEVEASKFTVAKFIY |
Full Sequence |
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Protein Sequence Length: 601 Download |
MAYDRLRPSE PGSSGVTQQQ NHEEPKAKNN KRKIVILSVI ALTMIVASAV CAGLVIGLRE 60 AGADPVGTQV RRKPTQAISK TCSRTRFPNL CVNSLLEFPG SLTANEQDLV HISFNMTLQH 120 FSKALYLANS ISFVQMDPRV RSAYDDCLEL LDDSVDALSR SLSSIIPSQD GGNNGGGSPQ 180 DVMTWLSAAL TNHDTCTEGF DGVSGTVKDQ VTDKLKDLSE LVSNCLSIFA ASGGDDFAGV 240 PIQNRRLLSA DDDLSGGNVD EENFPKWLGR KERELLNKPV SGIQADITVS KDGSGTVKTI 300 AEAIKKAPEH STRRIIIYVK AGRYEEDNLK VGRKKINLMF IGDGKGKTVI TGGKSVAEHM 360 TTFHTAAFAA TGAGFIARDM TFENYAGPAK HQAVALRVGA DHAVVYRCNI IGYQDTLYVH 420 SNRQFYRECD VYGTVDFIFG NAAVVLQNCS LYARKPMPQQ KNTITAQNRK DPNQNTGISI 480 HACRIIPTQD LAAAKSSFPT YLGRPWKLYS RTVYMLSYMG NHVHSRGWLE WSGTFALDTL 540 YYGEYMNSGP GAAVGQRVRW PGYRVITSEV EASKFTVAKF IYGTSWLPST GVAFFSGLQV 600 * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 3.0e-168 | 113 | 600 | 488 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 2.0e-174 | 26 | 598 | 586 | + pectinesterase | ||
PLN02301 | PLN02301 | 5.0e-180 | 74 | 598 | 531 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 600 | 602 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 286 | 583 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 70 | 600 | 81 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_190491.1 | 0 | 72 | 600 | 81 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 59 | 600 | 57 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 63 | 598 | 23 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 64 | 600 | 74 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 281 | 598 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 283 | 598 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-24 | 290 | 589 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-24 | 290 | 589 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 8e-24 | 290 | 589 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |