y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00065907m |
Family | CE8 |
Protein Properties | Length: 605 Molecular Weight: 62458.4 Isoelectric Point: 8.5926 |
Chromosome | Chromosome/Scaffold: 011718 Start: 4771 End: 6833 |
Description | pectin methylesterase 61 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 264 | 588 | 0 |
AVVALDGSGTHRSISEAIAAVTAPVGTKASGRGGAGGSRRKVIHVKAGRYKESVSISYQQEDVMLVGDGKGKTIIDGDKSVAGGYTTYSSATLERTTSMN ECDVSLAMSLTFECCHFFLSLSAGVSIVNSAGPVKGQAVALLVGGDGSVVYQCEIKAFQDTLFTHSNRQFYAESDISGTVDFIFGNSAVVFQRCNIQARK PSPGQQDVVTAHGRDDPNQNTGISIHRCRITGASDLGKTPVYLGRPWKKYARVAVMESTLDGSVAPAGWLAWPDQPAPSTTPLYYGEYRNTGAGAETKGR VTWTGVHTSLSTADAAKFTVEKFIM |
Full Sequence |
---|
Protein Sequence Length: 605 Download |
METFGGASSP ASQAKRRLPI VAWSCAMATV LVLVTVAPVA ARKGDEVASG VGVNTAAVSR 60 IATTSASAPP SSANATLICR STPDPSACET ALTSAEARSA RDPFAASVQF AMARATTARS 120 LARNLSASAP ASPPSGMHDC AELLDISLAQ LRDALAGFAA DAAGATTWLS AALTNQGTCD 180 DSLAAATPPP AGRDAVRKQV VSLARFIRTA LALHVNKVKG VGGSAVPPSA APPPNKGTVF 240 PSWLSEHDRR LLESPATNVI APDAVVALDG SGTHRSISEA IAAVTAPVGT KASGRGGAGG 300 SRRKVIHVKA GRYKESVSIS YQQEDVMLVG DGKGKTIIDG DKSVAGGYTT YSSATLERTT 360 SMNECDVSLA MSLTFECCHF FLSLSAGVSI VNSAGPVKGQ AVALLVGGDG SVVYQCEIKA 420 FQDTLFTHSN RQFYAESDIS GTVDFIFGNS AVVFQRCNIQ ARKPSPGQQD VVTAHGRDDP 480 NQNTGISIHR CRITGASDLG KTPVYLGRPW KKYARVAVME STLDGSVAPA GWLAWPDQPA 540 PSTTPLYYGE YRNTGAGAET KGRVTWTGVH TSLSTADAAK FTVEKFIMGN SWLGATGVGY 600 TSGL* 660 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 4.0e-104 | 78 | 604 | 540 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 1.0e-105 | 78 | 604 | 559 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-115 | 136 | 604 | 477 | + pectinesterase/pectinesterase inhibitor | ||
PLN02170 | PLN02170 | 2.0e-124 | 80 | 604 | 527 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 6.0e-130 | 263 | 590 | 332 | + Pectinesterase. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19539.1 | 0 | 1 | 604 | 1 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
RefSeq | NP_001048322.1 | 0 | 1 | 604 | 11 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148248.1 | 0 | 57 | 604 | 58 | 578 | pectinesterase-2 [Zea mays] |
RefSeq | XP_002449226.1 | 0 | 27 | 589 | 1 | 569 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
RefSeq | XP_002454668.1 | 0 | 1 | 604 | 1 | 575 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 260 | 604 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 260 | 604 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.0000000000002 | 273 | 590 | 17 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.0000000000002 | 273 | 590 | 17 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.0000000000002 | 273 | 590 | 17 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |