y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra004447 |
Family | CE8 |
Protein Properties | Length: 563 Molecular Weight: 61953.9 Isoelectric Point: 9.5718 |
Chromosome | Chromosome/Scaffold: 05 Start: 158705 End: 161209 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 248 | 543 | 0 |
VTVNQNGTGNFTTINEAVAAAPNKTDGSNGYFLIYVTAGLYEEYVEIPKYKRYVMMIGDGINQTVITGNRSVVDGWTTFKSATFILTGPNFIGVNITIRN TAGPTKGQAVALRSGGDFSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQKCNLYPRQPRQGQANEVTAQGRTDPNQNTGTVLHGCT IRPADDLASSSYRVKTYLGRPWKEYSRSVVMQTYIDGFLDPTGWNAWSGNFALSTLYYAEYNNTGPGSSTTNRVTWPGYHVINATDASNFTVTNFL |
Full Sequence |
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Protein Sequence Length: 563 Download |
MSQIFMFLIT LSFFSILSSP SLAARLQATG NTTSPSHVCR YAPDPSYCRS VLPNQPGDVY 60 SYGRFSLRRS ISRARRFISM IDYQLNRKGK VAVKSTVRAL EDCKFLASLT IDFLLSSSQT 120 VDATKTLSVS RADDVHTFLS AAITNEQTCL EGLKSTASEN GLSGDLYNDT KLYGVSLALF 180 SKGWVPKRKR SSPVWKPEAS FKKFSGFRNG RLPLKMTERT RAVYNTVTRS GRKLLQTGVD 240 AVQVSDIVTV NQNGTGNFTT INEAVAAAPN KTDGSNGYFL IYVTAGLYEE YVEIPKYKRY 300 VMMIGDGINQ TVITGNRSVV DGWTTFKSAT FILTGPNFIG VNITIRNTAG PTKGQAVALR 360 SGGDFSVFYS CSFEAYQDTL YTHSLRQFYR ECDVYGTVDF IFGNAAVVLQ KCNLYPRQPR 420 QGQANEVTAQ GRTDPNQNTG TVLHGCTIRP ADDLASSSYR VKTYLGRPWK EYSRSVVMQT 480 YIDGFLDPTG WNAWSGNFAL STLYYAEYNN TGPGSSTTNR VTWPGYHVIN ATDASNFTVT 540 NFLVGEGWIG QTGVPFVGGM IA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 3.0e-149 | 99 | 560 | 466 | + pectinesterase/pectinesterase inhibitor | ||
PLN02416 | PLN02416 | 1.0e-150 | 99 | 560 | 465 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-179 | 248 | 546 | 300 | + Pectinesterase. | ||
PLN02713 | PLN02713 | 0 | 24 | 562 | 545 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN03043 | PLN03043 | 0 | 34 | 561 | 547 | + Probable pectinesterase/pectinesterase inhibitor; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK84428.1 | 0 | 1 | 562 | 1 | 562 | papillar cell-specific pectin methylesterase-like protein [Brassica napus] |
RefSeq | NP_563662.1 | 0 | 1 | 562 | 1 | 579 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_566103.1 | 0 | 1 | 562 | 1 | 560 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_567227.1 | 0 | 1 | 562 | 1 | 573 | ATPMEPCRB; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002523112.1 | 0 | 31 | 561 | 36 | 566 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 250 | 560 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 248 | 560 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 3e-20 | 239 | 516 | 26 | 336 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 1e-17 | 247 | 496 | 7 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-17 | 247 | 496 | 7 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |