y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra029943 |
Family | CE8 |
Protein Properties | Length: 605 Molecular Weight: 66204 Isoelectric Point: 9.394 |
Chromosome | Chromosome/Scaffold: 01 Start: 15097102 End: 15100909 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 290 | 586 | 0 |
DIIVSKDGNGTCKTISEAIKKAPQYSSRRIIIYVKAGRYEENNLKVGRKKINLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAATGAGFIARDITFENW AGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMDLQKNTITAQNRKDPNQNTGISIHASRV LATPDLQATNGTIQTYLGRPWKLFSRTVYMLTYIGSHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSNLSQRVNWPGYRVINSTAEANRFTVTEFIY |
Full Sequence |
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Protein Sequence Length: 605 Download |
MGYERLGPSK PSGSVTATTA PAPNVNQVST STQPENTNRR RKKLLVSSIV VAFALILAAA 60 IFAGVRSNVN SSQHVPGLAR KPSQAISKAC EPTRFPELCV DSLMDFPGSL AASSAKDLIH 120 VTVNMTLHHF SHALYSSSSF SFLDMPPRVR SAYDSCLALL DDSVDARSRA LSSVVSVSTG 180 ETKPQDVMTW LSSALTNHET CVEGFDGVGD GGVKDQMTDA LKNLSELVSN CLAIFAANGD 240 GDGNDFTGVP IQNRRRRLLD VGDNNVKFPR WTKRREREIL EMPVSQIQAD IIVSKDGNGT 300 CKTISEAIKK APQYSSRRII IYVKAGRYEE NNLKVGRKKI NLMFVGDGKG KTVISGGKSI 360 FDNVTTFHTA SFAATGAGFI ARDITFENWA GPAKHQAVAL RIGADHAVIY RCNIIGYQDT 420 LYVHSNRQFF RECDIYGTVD FIFGNAAVVL QNCSIYARKP MDLQKNTITA QNRKDPNQNT 480 GISIHASRVL ATPDLQATNG TIQTYLGRPW KLFSRTVYML TYIGSHVHTR GWLEWNTTFA 540 LDTLYYGEYL NSGPGSNLSQ RVNWPGYRVI NSTAEANRFT VTEFIYGSSW LPSTGVSFLA 600 GLNI* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02506 | PLN02506 | 3.0e-156 | 86 | 602 | 520 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 9.0e-157 | 186 | 604 | 425 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-164 | 186 | 602 | 418 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 604 | 604 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 290 | 588 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 1 | 604 | 1 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_190491.1 | 0 | 1 | 604 | 1 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 80 | 604 | 70 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 63 | 602 | 19 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 80 | 604 | 81 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 285 | 602 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 287 | 602 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-18 | 294 | 532 | 12 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-18 | 294 | 532 | 12 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-18 | 294 | 532 | 12 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |