y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g042780.1 |
Family | CE8 |
Protein Properties | Length: 600 Molecular Weight: 64127.4 Isoelectric Point: 9.1943 |
Chromosome | Chromosome/Scaffold: 2 Start: 76512972 End: 76519282 |
Description | pectin methylesterase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 288 | 583 | 0 |
LVVAKDGSGNFTTVGEAVAAAPNNSESRFVIYIKAGGYFENVEVGSEKTNLMFVGDGMWKTVIKASRNVVDNSTTFRSATLAVVGTGFLARDLTVENAAG PSKHQAVALRVNADLAAFYRCSFAGYQDTLYAHSLRQFYRDCDVYGTVDFVFGDAAAVLQGCSLYARRPGPGQKNVVTAQGREDPNQNTGIVVQGGKVAA AADLVPVLGNVSSYLGRPWKLYSRTVFVQTKMEALVHPRGWLEWNGTFALDTLYYAEYMNRGPGADTSARVAWSGYHVLTNATDAANFTVLDFIQG |
Full Sequence |
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Protein Sequence Length: 600 Download |
MPRPPKRAAA AAAKLPLTAT FLSLSLSLLL LPLGFVATHR AFSGGVAAAS TPTAKRVLLE 60 DDGHANAAAA EHAAAVERHC AGTLHRDVCA STLSAIPDLA QKPVRDVISA VVARAAAAVR 120 ASASNCSAYL RRPAGAGALR VRDRLALSDC VELLQHTLAQ LGTAEAELSA ANSSTSTSTS 180 TDEESVAGVQ TVLSAALTNQ YTCLDGFAGP SASEDGRVRP YIQGRIYHVA HLVSNSLAML 240 RRLPQRRRRR GREALELEGY GRVRRGFPSW VSAADRRRLQ QQQVVPDLVV AKDGSGNFTT 300 VGEAVAAAPN NSESRFVIYI KAGGYFENVE VGSEKTNLMF VGDGMWKTVI KASRNVVDNS 360 TTFRSATLAV VGTGFLARDL TVENAAGPSK HQAVALRVNA DLAAFYRCSF AGYQDTLYAH 420 SLRQFYRDCD VYGTVDFVFG DAAAVLQGCS LYARRPGPGQ KNVVTAQGRE DPNQNTGIVV 480 QGGKVAAAAD LVPVLGNVSS YLGRPWKLYS RTVFVQTKME ALVHPRGWLE WNGTFALDTL 540 YYAEYMNRGP GADTSARVAW SGYHVLTNAT DAANFTVLDF IQGDLWLNST SFPYTLGFT* 600 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02713 | PLN02713 | 9.0e-157 | 189 | 597 | 430 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02933 | PLN02933 | 8.0e-160 | 142 | 598 | 464 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 2.0e-160 | 136 | 597 | 462 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-166 | 141 | 597 | 469 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 292 | 584 | 293 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACQ85264.1 | 0 | 64 | 598 | 43 | 564 | pectin methylesterase [Musa acuminata AAA Group] |
GenBank | EEC82670.1 | 0 | 39 | 599 | 34 | 579 | hypothetical protein OsI_27314 [Oryza sativa Indica Group] |
RefSeq | NP_001060620.1 | 0 | 39 | 599 | 34 | 579 | Os07g0675100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002455538.1 | 0 | 79 | 598 | 48 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
RefSeq | XP_002463382.1 | 0 | 18 | 599 | 18 | 599 | hypothetical protein SORBIDRAFT_02g042780 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 280 | 598 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 284 | 598 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-22 | 289 | 555 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-22 | 289 | 555 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-22 | 289 | 555 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |