y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G013700.1 |
Family | CE8 |
Protein Properties | Length: 606 Molecular Weight: 66158 Isoelectric Point: 9.0795 |
Chromosome | Chromosome/Scaffold: 15 Start: 896935 End: 901156 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 291 | 587 | 0 |
DIIVSGDGNGTCKTISEAIKKAPEYSTRRTVIYVRAGRYEENNLKVGRKKWNLMFIGDGKGKTIISGGKSVFNNLTTFHTASFAATGAGFIARDMTFENW AGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKPMAFQKNTITAQNRKDPNQNTGISIHACRI LATSDLTPLKGSFPTFLGRPWKLYSRTVYMLSYIGDHVHPRGWLEWNTTFALDTLYYGEYMNYGPGGAVGQRVKWPGYRVVTSTIEASKFTVAQFIY |
Full Sequence |
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Protein Sequence Length: 606 Download |
MDYGRLGPTE SDPGEGSGTS FNINEPQLAT PRVSPTRKKR IIFLAIFSIA LIAASAVSAV 60 LLLGIRTKAS GQPDPSSLTH RKPTQAISKT CSKTRFPNLC VSSLLDFPGS VSASESDLVH 120 ISFNMTLQHF SKALYLSSAI SYVNMETRVR SAFDDCLELL DDSIDALSRS LSTVAPSHGG 180 GTGGGSPADV VTWLSAALTN QDTCSEGFDG VNGAVKNQMT GRLKDLTELV SNCLAIFSSA 240 NGDDFSGVPV QNKRRLLTEN EDISYEENFP RWLGRRDRKL LDVPVPAIHA DIIVSGDGNG 300 TCKTISEAIK KAPEYSTRRT VIYVRAGRYE ENNLKVGRKK WNLMFIGDGK GKTIISGGKS 360 VFNNLTTFHT ASFAATGAGF IARDMTFENW AGPAKHQAVA LRVGADHAVV YRCNIIGYQD 420 TLYVHSNRQF FRECDIYGTV DFIFGNAAVV FQNCSIYARK PMAFQKNTIT AQNRKDPNQN 480 TGISIHACRI LATSDLTPLK GSFPTFLGRP WKLYSRTVYM LSYIGDHVHP RGWLEWNTTF 540 ALDTLYYGEY MNYGPGGAVG QRVKWPGYRV VTSTIEASKF TVAQFIYGSS WLPSTGVSFL 600 AGLSL* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02506 | PLN02506 | 1.0e-170 | 84 | 604 | 523 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 2.0e-175 | 122 | 603 | 483 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-180 | 22 | 603 | 588 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 605 | 606 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 291 | 589 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 80 | 605 | 82 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_190491.1 | 0 | 81 | 605 | 81 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 80 | 605 | 69 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 64 | 603 | 14 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 1 | 605 | 1 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 288 | 603 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 288 | 603 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-21 | 295 | 594 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-21 | 295 | 594 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-20 | 295 | 594 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |