y
Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10023718m |
Family | CE8 |
Protein Properties | Length: 541 Molecular Weight: 59309.6 Isoelectric Point: 5.7004 |
Chromosome | Chromosome/Scaffold: 3 Start: 45953673 End: 45955419 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 226 | 522 | 0 |
VTVALDGTGNFSTITDAINVAPNNTNPDNGYFLIYVTAGVYQEYISIPKNKKNLMMIGDGINQTIITGNRNVVDGWTTSNSATFIVVAPNFVASDITIRN TAGAVKHQAVALRSAADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCT IRASNDLASGSQTVQTYLGRPWKEYSRTVYMQTFMDSLINPAGWHDWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHIIDATEAANFTVSNFLS |
Full Sequence |
---|
Protein Sequence Length: 541 Download |
DNVDPPTTPV PPETICMYTP KPKDCKSVLP ATPNQTADTY TYCRLSIRKA LSQTQKFFNL 60 VDNYLKSGST LPLSAIRTLD DCRLLAGLNL DYLSSSYQAA NTTSRILKTI QADDVQAQLS 120 AILTNQNTCL DDIQDSALSE SVKNGLSVPL LEDIKLSSVL LALFRKGWVG EKKIVTSWQP 180 SKTQSMFGHN GRLPLIMSDR IRAIYDSVRG RKLTGGDEGV LVIDIVTVAL DGTGNFSTIT 240 DAINVAPNNT NPDNGYFLIY VTAGVYQEYI SIPKNKKNLM MIGDGINQTI ITGNRNVVDG 300 WTTSNSATFI VVAPNFVASD ITIRNTAGAV KHQAVALRSA ADLSTFYSCS FEGYQDTLYT 360 HSLRQFYREC DIYGTVDFIF GNAAVVLQNC NIYPRLPMSG QFNAITAQGR TDPNQNTGTS 420 IHNCTIRASN DLASGSQTVQ TYLGRPWKEY SRTVYMQTFM DSLINPAGWH DWSGDFALST 480 LYYAEYNNTG PGSDTTNRVT WPGYHIIDAT EAANFTVSNF LSGDNWLPQT GVPYNGGFIS 540 * 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 3.0e-154 | 15 | 538 | 528 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02416 | PLN02416 | 3.0e-157 | 16 | 537 | 525 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 0 | 15 | 540 | 531 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN03043 | PLN03043 | 0 | 16 | 539 | 542 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
pfam01095 | Pectinesterase | 0 | 226 | 524 | 300 | + Pectinesterase. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42040.1 | 0 | 5 | 539 | 30 | 564 | pectin methylesterase 3 [Pyrus communis] |
RefSeq | XP_002268492.1 | 0 | 13 | 538 | 33 | 555 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302726.1 | 0 | 6 | 539 | 28 | 558 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320332.1 | 0 | 5 | 539 | 29 | 560 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523112.1 | 0 | 5 | 539 | 33 | 566 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 226 | 538 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 222 | 538 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 7e-26 | 236 | 528 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-26 | 236 | 528 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 7e-26 | 236 | 528 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DT739296 | 287 | 253 | 539 | 0 |
JG584485 | 296 | 191 | 486 | 0 |
EX028914 | 270 | 272 | 541 | 0 |
FS944812 | 290 | 232 | 521 | 0 |
DN497639 | 251 | 234 | 484 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|