y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.T148300.1 |
Family | CE8 |
Protein Properties | Length: 568 Molecular Weight: 61544.8 Isoelectric Point: 9.8538 |
Chromosome | Chromosome/Scaffold: 495 Start: 12135 End: 13963 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 256 | 551 | 0 |
DVVVAADGSGNYKTVSAAVAAAPKYSSKRYIIRIKAGVYRENVEVTKEKSNIMFLGDGRKTTIITGSRNVIGGSTTYHSATVAVVGQGFLARDITFQNTA GPSKYQAVALRVESDFAAFYKCGMLGYQNTLYVHSNRQFFRNCFIAGTIDFIFGNAAAVFQDSDIRARRPNPGQTITITAQGRSDPTQNTGIVIQKCRIG VTSDLHPVRSNFSAYLGRPWKEYARTVIMQSSISDVIHPAGWNGLKGRFALSTLSFAEYKNSGAGAGTSERVTWEGYKMITSATEAQSFTPRNFIA |
Full Sequence |
---|
Protein Sequence Length: 568 Download |
MTEANQYISI SKKNKKLILA IFASFLLVAT IIAVVTVVNS HKNSTQNDAA QAKLETSCNS 60 TKHPDLCSSS ISTLSGAAVT LKVPMNDFLG QINITIDAAQ HNMVALSKNN GTSYSKLDDR 120 QKKALNDCYG NYDMVVTDLK MVLADVNFHP NKKPAVNLKT RLSSCATNEN SCLDGFSHSK 180 KDNAVRKELF AGLIYVSGKC TGALQMITGE PTADTATGLK TTNRKLKEGN DSNEGGAEWL 240 SVTDRRLFQL SSLTPDVVVA ADGSGNYKTV SAAVAAAPKY SSKRYIIRIK AGVYRENVEV 300 TKEKSNIMFL GDGRKTTIIT GSRNVIGGST TYHSATVAVV GQGFLARDIT FQNTAGPSKY 360 QAVALRVESD FAAFYKCGML GYQNTLYVHS NRQFFRNCFI AGTIDFIFGN AAAVFQDSDI 420 RARRPNPGQT ITITAQGRSD PTQNTGIVIQ KCRIGVTSDL HPVRSNFSAY LGRPWKEYAR 480 TVIMQSSISD VIHPAGWNGL KGRFALSTLS FAEYKNSGAG AGTSERVTWE GYKMITSATE 540 AQSFTPRNFI AGSSWLKSTT FPFSLDL* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 2.0e-149 | 39 | 563 | 529 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 2.0e-153 | 81 | 567 | 494 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-157 | 41 | 564 | 535 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 40 | 567 | 543 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 256 | 553 | 298 | + Pectinesterase. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309640.1 | 0 | 1 | 567 | 1 | 542 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309641.1 | 0 | 1 | 567 | 1 | 567 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 0 | 1 | 567 | 1 | 572 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331123.1 | 0 | 1 | 567 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336803.1 | 0 | 1 | 567 | 1 | 542 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 251 | 567 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 253 | 559 | 1 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-25 | 267 | 525 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-25 | 267 | 525 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-24 | 267 | 525 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |