y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb02g043780.1 |
Family | CE8 |
Protein Properties | Length: 572 Molecular Weight: 62212.2 Isoelectric Point: 6.2099 |
Chromosome | Chromosome/Scaffold: 2 Start: 77583549 End: 77585577 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 249 | 546 | 0 |
NVTVAADGSGDVKTIKEALAKVPPKNKDLYVVHVKAGTYKEYVSVARPQTNVAFIGDGAEKTIITGSKNFKMNLTTKDTATMEAIGNGFFMRDIRVENTA GAENHQAVALRVQSDQAVFYQCTFDGYQDTLYTHAQRQFFRDCRVTGTIDFIFGNSQVVLQNCLIQPRKPMPNQANIITAQGRRDKRSVGGTVLHNCTIE PHPDFKADAGGKIATYLARPWKEYSRTLYIQNDIGGFIDPKGWLEWNGDFGLETLFYAEVDNRGAGADMSKRAKWGGIKTVTYEEAQKEFTVETFIQG |
Full Sequence |
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Protein Sequence Length: 572 Download |
MSKGAIIGAS TVLVVAVVAA VCVVSFKGNN SSKGDGDENM SMSVKSVKAF CQPTDYKQTC 60 EAELSKAAGN ASTPSDLAKV IFGVTSDKIH KAISESETLK ELKNDQRTSG ALKDCNELLE 120 YAIDDLKSSF DKLGGFEMTN FKKAVDDLKT WLSAALTYQD TCLDGFMNAT STEASGKMKK 180 ALNASQELTE DILAVVDQFS DTLGGLSVGR RLLDDAATPT PSWVSEADAG RQRLLADSAG 240 AGSPDFKPNV TVAADGSGDV KTIKEALAKV PPKNKDLYVV HVKAGTYKEY VSVARPQTNV 300 AFIGDGAEKT IITGSKNFKM NLTTKDTATM EAIGNGFFMR DIRVENTAGA ENHQAVALRV 360 QSDQAVFYQC TFDGYQDTLY THAQRQFFRD CRVTGTIDFI FGNSQVVLQN CLIQPRKPMP 420 NQANIITAQG RRDKRSVGGT VLHNCTIEPH PDFKADAGGK IATYLARPWK EYSRTLYIQN 480 DIGGFIDPKG WLEWNGDFGL ETLFYAEVDN RGAGADMSKR AKWGGIKTVT YEEAQKEFTV 540 ETFIQGQQFI PKWGVPFIPG LLPQEQQGRT H* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 3.0e-162 | 27 | 561 | 539 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 1.0e-163 | 46 | 557 | 527 | + pectinesterase | ||
pfam01095 | Pectinesterase | 5.0e-166 | 249 | 546 | 299 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 4.0e-168 | 28 | 561 | 551 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02217 | PLN02217 | 2.0e-179 | 30 | 562 | 537 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ05229.1 | 0 | 40 | 571 | 38 | 570 | hypothetical protein OsI_27427 [Oryza sativa Indica Group] |
GenBank | EAZ41174.1 | 0 | 40 | 571 | 38 | 570 | hypothetical protein OsJ_25671 [Oryza sativa Japonica Group] |
RefSeq | NP_001060715.1 | 0 | 40 | 571 | 38 | 566 | Os07g0691100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151322.1 | 0 | 30 | 570 | 29 | 566 | pectinesterase-1 [Zea mays] |
RefSeq | XP_002461260.1 | 0 | 27 | 571 | 27 | 571 | hypothetical protein SORBIDRAFT_02g043780 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 248 | 561 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 249 | 561 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000000001 | 261 | 519 | 19 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000000001 | 261 | 519 | 19 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000000001 | 261 | 519 | 19 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |