y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra004481 |
Family | CE8 |
Protein Properties | Length: 593 Molecular Weight: 64417.5 Isoelectric Point: 9.3211 |
Chromosome | Chromosome/Scaffold: 05 Start: 360193 End: 362212 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 281 | 575 | 0 |
YVVAKDGSGQFKSIQQAVNACPDKNAGRCIIHIKAGIYREQVIIPKKKNNIFMFGDGARKTVITYNRSVGLSSGTTTSTSGTVQVESEGFMAKWIGFKNT AGPNGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNSLIVIRKGNKGQYNTVTADGNEKGLSMKIGIVIQNCR IVPDKKLAPERLTVESYLGRPWKQYSTTVVINTEIGDVIRPEGWRLWDGESFHKTCRYVEYNNRGPGANTNRRVNWAKVARSAGEINQFTVANWL |
Full Sequence |
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Protein Sequence Length: 593 Download |
MIGKVVVSVA SVLLLVGVAI GVVAIVNKSG NTNLSPQMKA VQGICQATAD KASCVKTLEP 60 VKSDDPNKLI KAFMLATQDA LTKSSNFTDK TEGNMGSSIS PNNKAVLDYC RKVFMYALED 120 LGTILEEMGE DLNTIGNKFD QLKQWLTGVY NYQTDCLDDI QEDDLRKTIA EGISSSKILT 180 GNAIDIFHTV VSAMAKIDAK VDDFKNMTSG IFTPSAPANK EAAPVVDTPV ADPDGLSRRL 240 LEDLDDLGVP TWVSGADRKL MANAGRGRRG GGGAPRIRAT YVVAKDGSGQ FKSIQQAVNA 300 CPDKNAGRCI IHIKAGIYRE QVIIPKKKNN IFMFGDGARK TVITYNRSVG LSSGTTTSTS 360 GTVQVESEGF MAKWIGFKNT AGPNGHQAVA IRVNGDRAVI FNCRFDGYQD TLYVNNGRQF 420 YRNCVVSGTV DFIFGKSATV IQNSLIVIRK GNKGQYNTVT ADGNEKGLSM KIGIVIQNCR 480 IVPDKKLAPE RLTVESYLGR PWKQYSTTVV INTEIGDVIR PEGWRLWDGE SFHKTCRYVE 540 YNNRGPGANT NRRVNWAKVA RSAGEINQFT VANWLAPVNW IQEANVPVTL GL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 1.0e-101 | 250 | 592 | 345 | + pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 7.0e-104 | 28 | 592 | 569 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 8.0e-135 | 39 | 592 | 565 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-137 | 282 | 575 | 296 | + Pectinesterase. | ||
PLN02197 | PLN02197 | 0 | 27 | 592 | 568 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV91508.1 | 0 | 28 | 592 | 28 | 595 | VANGUARD 1 [Arabidopsis thaliana] |
GenBank | AAV91509.1 | 0 | 28 | 592 | 28 | 588 | VGD1-like protein 1 [Arabidopsis thaliana] |
EMBL | CAB58974.1 | 0 | 28 | 592 | 28 | 595 | pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_182226.1 | 0 | 28 | 592 | 28 | 588 | VGDH1; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_182227.1 | 0 | 28 | 592 | 28 | 595 | VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 282 | 592 | 10 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 277 | 592 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-22 | 282 | 574 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-22 | 282 | 574 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-22 | 282 | 574 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |