y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra040474 |
Family | CE8 |
Protein Properties | Length: 597 Molecular Weight: 64890.4 Isoelectric Point: 9.4097 |
Chromosome | Chromosome/Scaffold: 04 Start: 18954208 End: 18956097 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 285 | 579 | 0 |
YVVAKDGSGQFKTVQQAVDACPQKNPGRCIIHIKAGIYKEQVVIPKKKNNIFMFGDGARKTIISFNRSVKLTPGTTTSLSGTVQVESEGFMAKFIGFKNT AGPMGHQAVAIRVNGDRAVLFNCRFDGYQDTLYANNGRQFYRNIVVSGTIDFIFGKGATVIQNSMIVVRKGNKNQFNTVTADGNEKGLSMKIGIVLQNCR IVADKKLQAERLTVASYLGRPWKKYSTTAVINSEIGDVIKPEGWKIWDGESFHKTCKYVEFNNRGPGANTNKRVDWVKIAKSASEVNQFSVANWL |
Full Sequence |
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Protein Sequence Length: 597 Download |
MIGKVVVSVA SVLLLVGVAI GVVAIVNRNN DTPLSPQMKA VQGICQATSD KASCVKTLEP 60 VKSDDPNKLI KAFILATQDA ITKSSNFTGK TEGKLGSSIS PNNKAVLDYC KRVFMYALED 120 LGTIIEEMGE DLNQIGSKID QLKQWLTGVY NYQTDCLDDI EEDDLRKTIG EGIANSKILT 180 GNAIDIFHTV VSAMAKLNIK MDDFKNMTGD FFSSSEKGAA PVDKKATPAV DTPVADPDGP 240 SRRLLEDLDD LGIPRWVSGT DRKLMANAGR GEKGGEGGAR MKATYVVAKD GSGQFKTVQQ 300 AVDACPQKNP GRCIIHIKAG IYKEQVVIPK KKNNIFMFGD GARKTIISFN RSVKLTPGTT 360 TSLSGTVQVE SEGFMAKFIG FKNTAGPMGH QAVAIRVNGD RAVLFNCRFD GYQDTLYANN 420 GRQFYRNIVV SGTIDFIFGK GATVIQNSMI VVRKGNKNQF NTVTADGNEK GLSMKIGIVL 480 QNCRIVADKK LQAERLTVAS YLGRPWKKYS TTAVINSEIG DVIKPEGWKI WDGESFHKTC 540 KYVEFNNRGP GANTNKRVDW VKIAKSASEV NQFSVANWLA PVEWIQEANV PVNLGL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-103 | 29 | 596 | 572 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 7.0e-104 | 27 | 596 | 594 | + pectinesterase | ||
pfam01095 | Pectinesterase | 2.0e-134 | 286 | 579 | 296 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 3.0e-135 | 29 | 596 | 585 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02197 | PLN02197 | 0 | 27 | 596 | 571 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV91508.1 | 0 | 28 | 596 | 28 | 595 | VANGUARD 1 [Arabidopsis thaliana] |
GenBank | AAV91509.1 | 0 | 28 | 596 | 28 | 588 | VGD1-like protein 1 [Arabidopsis thaliana] |
EMBL | CAB58974.1 | 0 | 28 | 596 | 28 | 595 | pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_182226.1 | 0 | 28 | 596 | 28 | 588 | VGDH1; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_182227.1 | 0 | 28 | 596 | 28 | 595 | VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 286 | 596 | 10 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 283 | 596 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-18 | 286 | 578 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-18 | 286 | 578 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-18 | 286 | 578 | 7 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |