y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra039421 |
Family | CE8 |
Protein Properties | Length: 617 Molecular Weight: 67536.7 Isoelectric Point: 7.9573 |
Chromosome | Chromosome/Scaffold: 05 Start: 23277554 End: 23279561 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 257 | 552 | 0 |
DIVVAQDGSGQYATINDALKHVPKKKNTTFVVHIKAGIYKEYVQVNKSMTHLVFIGDGPEKTIISGSKNYKDGITTYRTATVAIVGDYFIAKNIGFVNTA GAIKHQAVAIRVQSDESIFFNCRFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLPNQACPITAHGRKDVRESTGFVFQGCTIA GEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFIQPQGWQPWLGNFGLDTLFYSEVQNTGPGAALANRVTWPGIKTLSNEEILKFTPDQYIQG |
Full Sequence |
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Protein Sequence Length: 617 Download |
MSYGYDDDSK RKKRYVIISI SSVLLISMVV AVTVGVNLNK HDGKGDSESN GQITASVKAV 60 KDICAPTDYK KTCEYSLIKN GNNTTDPMEL VKTAFSVTMK QITDAAKKSQ TIIDLQKDPR 120 TRMALDQCKE LMDYALGELS NSFEELGKLE FHKLDEVLIN LRIWLSAAIS HEETCLEGFQ 180 GTQGNAGETM KKALKTAIEL THNGLAIISE MSNFVGQIDI PGLNSRRLLA QEIPSWVDQR 240 GRRLLQAASE YSDAKPDIVV AQDGSGQYAT INDALKHVPK KKNTTFVVHI KAGIYKEYVQ 300 VNKSMTHLVF IGDGPEKTII SGSKNYKDGI TTYRTATVAI VGDYFIAKNI GFVNTAGAIK 360 HQAVAIRVQS DESIFFNCRF DGYQDTLYAH SHRQFYRDCT ISGTIDFLFG DAAAVFQNCT 420 LLVRKPLPNQ ACPITAHGRK DVRESTGFVF QGCTIAGEPD YLAVKETSKA YLGRPWKEYS 480 RTIIMNTFIP DFIQPQGWQP WLGNFGLDTL FYSEVQNTGP GAALANRVTW PGIKTLSNEE 540 ILKFTPDQYI QGDVWVHGKG VPYTPGLLAA NPNAATTIPS NSAAPGFSSF TDTSGAGSVS 600 PAASPQGSIK MVSKSN* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 1.0e-163 | 10 | 567 | 568 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02217 | PLN02217 | 0 | 1 | 593 | 593 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 0 | 4 | 564 | 573 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 36 | 567 | 557 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 257 | 553 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42986.1 | 0 | 1 | 612 | 1 | 615 | putative pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_187212.1 | 0 | 1 | 612 | 1 | 615 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_198139.1 | 0 | 1 | 605 | 1 | 599 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002314364.1 | 0 | 42 | 570 | 42 | 571 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512459.1 | 0 | 1 | 567 | 1 | 579 | Pectinesterase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 250 | 567 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 259 | 567 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-21 | 267 | 545 | 43 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 8e-19 | 268 | 525 | 18 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-19 | 268 | 525 | 18 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |