y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra040293 |
Family | CE8 |
Protein Properties | Length: 561 Molecular Weight: 61401.6 Isoelectric Point: 8.5081 |
Chromosome | Chromosome/Scaffold: 01 Start: 28066284 End: 28068579 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 250 | 544 | 0 |
AVVAQDGSGQFKTINDALNAVPKENKVPFVIHIKEGVYKEKVVVTRKMPYVTFIGDGPTKTVITGSLNFGIGKVKTYLTAPLTVEGEHFTAKGIGMENTA GPEGGQAVALRVSGDYAVFFDCQIDGYQDTLYVHSQRQFYRDCTVSGTVDFIFGDSQCILQNCKIVVRKPMAGQSCMVTAQGRSDVREPTGIVLHNCHIV GDPAYIPVRTASKAYLGRPWKEFSRTIVMKTIVDDVIDPAGWLPWSGDFALKTLYYAEHLNVGPGANQAQRVKWPGIKKLTPEQALSYTGDRFLS |
Full Sequence |
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Protein Sequence Length: 561 Download |
MALDGDKKKK CIIAGVVSGL LVIMVVSVAI IASKNSPNEN EIRQNTKAVK TVCAPTDYKE 60 TCLKSLMDAS PKSTEPLALI KLSFNVTIKS IQEGLKKASE DVKHKADKHP EAKDAFELCE 120 KVMNDAIADL KKCVDHKVSV DEIERFIKDL RVWISGSIAF QQTCIDTFEE IKSTLKHDMI 180 NIFKRSRQLS SNSLAMVTDL NSNATELTGA FENNARKLLS TEEDGVPTWV GPEARRLMGA 240 PGGPPVKANA VVAQDGSGQF KTINDALNAV PKENKVPFVI HIKEGVYKEK VVVTRKMPYV 300 TFIGDGPTKT VITGSLNFGI GKVKTYLTAP LTVEGEHFTA KGIGMENTAG PEGGQAVALR 360 VSGDYAVFFD CQIDGYQDTL YVHSQRQFYR DCTVSGTVDF IFGDSQCILQ NCKIVVRKPM 420 AGQSCMVTAQ GRSDVREPTG IVLHNCHIVG DPAYIPVRTA SKAYLGRPWK EFSRTIVMKT 480 IVDDVIDPAG WLPWSGDFAL KTLYYAEHLN VGPGANQAQR VKWPGIKKLT PEQALSYTGD 540 RFLSGNTWIP RTQVPYTAGM * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 3.0e-155 | 8 | 560 | 560 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 0 | 1 | 558 | 572 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 34 | 560 | 542 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 249 | 546 | 299 | + Pectinesterase. | ||
PLN02217 | PLN02217 | 0 | 4 | 560 | 562 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63815.1 | 0 | 33 | 558 | 33 | 560 | pectin methylesterase, putative [Arabidopsis thaliana] |
DDBJ | BAC42959.2 | 0 | 33 | 558 | 33 | 566 | putative pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_187339.2 | 0 | 33 | 558 | 33 | 566 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_199729.1 | 0 | 41 | 556 | 47 | 566 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002314364.1 | 0 | 32 | 560 | 43 | 568 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 248 | 560 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 246 | 560 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 3e-30 | 249 | 550 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 3e-30 | 249 | 550 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 3e-30 | 249 | 550 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |