y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra020658 |
Family | CE8 |
Protein Properties | Length: 571 Molecular Weight: 62196.7 Isoelectric Point: 9.2384 |
Chromosome | Chromosome/Scaffold: 02 Start: 23888381 End: 23890674 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 258 | 553 | 0 |
NVVVAKDGSGQYKSINEALKAVPINNKVPFVIYIKQGVYKEKVVVTKQMYHVTFIGDGPTKTKITGSVNFAIGKVRTYLTSSLTVEGDNFVAKNMGIENT AGPPGGQAVALRVSADCVVIFNCQIDGYQDTLYVHSHRQFYRDSTISGTVDFIFGDSIAIFQNCNIVVRKPMGGQGCMVTAQGRTDVRAPTAIVLHNCRI IGEPAYLPVKNINKAYLGRPWKEFARTIVMRTTISDVIDPAGWAAWSGDFALKTLFYAEYENSGPGSNKAQRVKWPGIQRITRPQALGFAPGRFLR |
Full Sequence |
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Protein Sequence Length: 571 Download |
MGFGKDNKKK KCIVAGAVTG LLVIMVVAVA VIANQHAHAC KKIPDVNIKM TSKAVEAVCA 60 PTDFKETCVN SFMKASPNST EPLDLIKLSF NITIQAIKDG VKKSSVELKA KADHETKGSL 120 ELCETLMNDA IDDLTKCFDN FAGFSVDQIE KFVYDLRVWL SGSISYQQTC MDAFEEVKSI 180 LAQDMKDIFK PSKELTSNSL AMITSMSSMF GKSNITEATG DLGNNARKLL NAEDGFPSWV 240 GPDTRRLMAA PQGGVKPNVV VAKDGSGQYK SINEALKAVP INNKVPFVIY IKQGVYKEKV 300 VVTKQMYHVT FIGDGPTKTK ITGSVNFAIG KVRTYLTSSL TVEGDNFVAK NMGIENTAGP 360 PGGQAVALRV SADCVVIFNC QIDGYQDTLY VHSHRQFYRD STISGTVDFI FGDSIAIFQN 420 CNIVVRKPMG GQGCMVTAQG RTDVRAPTAI VLHNCRIIGE PAYLPVKNIN KAYLGRPWKE 480 FARTIVMRTT ISDVIDPAGW AAWSGDFALK TLFYAEYENS GPGSNKAQRV KWPGIQRITR 540 PQALGFAPGR FLRGGSWIPQ TGVPYLPNLQ * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-156 | 12 | 569 | 564 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 0 | 1 | 570 | 573 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02217 | PLN02217 | 0 | 48 | 569 | 522 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 52 | 564 | 528 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 258 | 554 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63815.1 | 0 | 47 | 565 | 43 | 558 | pectin methylesterase, putative [Arabidopsis thaliana] |
DDBJ | BAC42959.2 | 0 | 47 | 565 | 43 | 564 | putative pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_187339.2 | 0 | 47 | 565 | 43 | 564 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_199729.1 | 0 | 37 | 570 | 38 | 571 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002314364.1 | 0 | 44 | 565 | 49 | 564 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 258 | 569 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 255 | 565 | 5 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 5e-28 | 258 | 559 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 5e-28 | 258 | 559 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 5e-28 | 258 | 559 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |