y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00035617m |
Family | CE8 |
Protein Properties | Length: 596 Molecular Weight: 64643.8 Isoelectric Point: 8.4942 |
Chromosome | Chromosome/Scaffold: 094520 Start: 44 End: 2278 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 281 | 577 | 0 |
NVVVAKDGSGKFKTINDALNAMPAKYTGRYLIYVKQGVYEEYVTITRAMENVTMYGDGAMKTIVTGSRNFADGLTTYKTATFNAQGDGFIAIALGFRNTA GPAKHQAVALLVQSDRSIFLNCRVDAYQDTLYAHSKAQFYRNCVISGTIDFVFGDAAAVFQNCVLVLRRPLDSQQNIATAQGRADGRESTGFVFQYCRFA AEAALRDASRPAIRSYLARPWREFSRTLIMESEIPAFINKAGYLPWNGDFGLKTLWYAEYANRGPGADTAGRVTWSGYKKVISKDEAAKFTVQSFLH |
Full Sequence |
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Protein Sequence Length: 596 Download |
MGGAAVAYNA SVQDDESSSD ESSSSSSSSP SSGGSGSNLI SVSKSVKMMC AQTDHRDACE 60 KSLSKATNAS ASSPKDIVRA AVAVIGDAVG KAFDRSALAT SDDPRVKAAI ADCKEIYQNA 120 KADLARTLRG IDAGGMDEVT RRGYELRVWL SAVIAHMETC IDGFPDGDLK RNMTATMESG 180 KELTSNALAI IEKASSFLAA LHITAASHRR LLSIREGEDV EKQPKVNHSG TFLGERGDSP 240 APESYRRRLL GVEDDDTPPW MDGPERRLLK GNNFQSRLTP NVVVAKDGSG KFKTINDALN 300 AMPAKYTGRY LIYVKQGVYE EYVTITRAME NVTMYGDGAM KTIVTGSRNF ADGLTTYKTA 360 TFNAQGDGFI AIALGFRNTA GPAKHQAVAL LVQSDRSIFL NCRVDAYQDT LYAHSKAQFY 420 RNCVISGTID FVFGDAAAVF QNCVLVLRRP LDSQQNIATA QGRADGREST GFVFQYCRFA 480 AEAALRDASR PAIRSYLARP WREFSRTLIM ESEIPAFINK AGYLPWNGDF GLKTLWYAEY 540 ANRGPGADTA GRVTWSGYKK VISKDEAAKF TVQSFLHAEP WLKPAGAPVK YGFWA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02217 | PLN02217 | 2.0e-154 | 44 | 595 | 561 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 2.0e-156 | 40 | 588 | 562 | + pectinesterase | ||
PLN02468 | PLN02468 | 5.0e-157 | 41 | 593 | 557 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 3.0e-178 | 281 | 576 | 296 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 0 | 42 | 594 | 557 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ07185.1 | 0 | 38 | 595 | 74 | 663 | hypothetical protein OsI_29431 [Oryza sativa Indica Group] |
GenBank | EAZ44838.1 | 0 | 37 | 594 | 161 | 689 | hypothetical protein OsJ_29475 [Oryza sativa Japonica Group] |
RefSeq | NP_001061941.1 | 0 | 38 | 595 | 74 | 664 | Os08g0450200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001063246.1 | 0 | 37 | 594 | 88 | 616 | Os09g0433700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002445591.1 | 0 | 38 | 595 | 83 | 626 | hypothetical protein SORBIDRAFT_07g022100 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 276 | 593 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 278 | 586 | 1 | 308 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 7e-20 | 279 | 502 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 7e-20 | 279 | 502 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 8e-20 | 279 | 502 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL800265 | 247 | 188 | 434 | 0 |
FL800266 | 241 | 190 | 430 | 0 |
CF208165 | 263 | 287 | 549 | 0 |
CI145294 | 197 | 400 | 596 | 0 |
CI124884 | 197 | 400 | 596 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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