y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra001219 |
Family | CE8 |
Protein Properties | Length: 578 Molecular Weight: 63889.6 Isoelectric Point: 7.8355 |
Chromosome | Chromosome/Scaffold: 03 Start: 15394424 End: 15396974 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 268 | 560 | 0 |
AVVAQDGSGQFKTIAEALNFVPKDNSPFIIYIKTGIYKEQIKITKKMPYVTMIGDGQNLTIITGSLNFGIGRVKTFLTATVTIEGEHFTAKAIGIENTAG PDGRQAVAMRVSADYAVFYECKFDGYQDTLFVHSQRQFYRDCTVTGTIDFVFGDAKCILQNSVIVFRKPKKGQTCVVAAQGRSDRHESTGLVFQNCHITG DEEYMAMRPAKKSFLGRPWKRFSRTIMLMSALDDVIDPDGWLPWKGEFALKTLYFAEYLSGGFGANDSLRVKWPGVKNITAEDAQLYTGGRFL |
Full Sequence |
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Protein Sequence Length: 578 Download |
MALDEDKKQK CLVAGSVSAV LLIMVVSVAV ITSKNSPNEN QIRQATKAVK AVCAPTDYKE 60 ICLKSIMDAS PNSTEPLELI KLAINVTIES INQGLKKASI DVKPKTDEDP EAKDAFELCE 120 KLMFDAIDDL KKCLNRGFSA AQIVGFVEDL RVWLSGAIAF QQTCIDSFKE IKSNTLMIDM 180 RKIFKPSKRL TSNSLAMVTE LSTILPNSNT TGLTKALSKY ARKLLNTEED GIPTWVRPEV 240 RRLIEEEAPP IELEPQPPPP PPPARTDAVV AQDGSGQFKT IAEALNFVPK DNSPFIIYIK 300 TGIYKEQIKI TKKMPYVTMI GDGQNLTIIT GSLNFGIGRV KTFLTATVTI EGEHFTAKAI 360 GIENTAGPDG RQAVAMRVSA DYAVFYECKF DGYQDTLFVH SQRQFYRDCT VTGTIDFVFG 420 DAKCILQNSV IVFRKPKKGQ TCVVAAQGRS DRHESTGLVF QNCHITGDEE YMAMRPAKKS 480 FLGRPWKRFS RTIMLMSALD DVIDPDGWLP WKGEFALKTL YFAEYLSGGF GANDSLRVKW 540 PGVKNITAED AQLYTGGRFL GGDSWIPHTQ VPYIANL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 8.0e-149 | 16 | 573 | 565 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02217 | PLN02217 | 2.0e-165 | 4 | 577 | 581 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 6.0e-168 | 267 | 563 | 299 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 8.0e-178 | 7 | 572 | 598 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 0 | 1 | 577 | 587 | + Probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63815.1 | 0 | 33 | 577 | 33 | 562 | pectin methylesterase, putative [Arabidopsis thaliana] |
DDBJ | BAC42959.2 | 0 | 33 | 575 | 33 | 566 | putative pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_187339.2 | 0 | 33 | 577 | 33 | 568 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_199729.1 | 0 | 41 | 577 | 47 | 570 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002314364.1 | 0 | 32 | 577 | 43 | 568 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 267 | 577 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 267 | 577 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 3e-27 | 267 | 567 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 3e-27 | 267 | 567 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 3e-27 | 267 | 567 | 5 | 339 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |