y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra009938 |
Family | CE8 |
Protein Properties | Length: 677 Molecular Weight: 71923.2 Isoelectric Point: 7.4409 |
Chromosome | Chromosome/Scaffold: 06 Start: 18208436 End: 18210849 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 234 | 529 | 0 |
DMVVAQDGSGQYKTISEAMQNVPKNKNVTFVVYIKTGVYKEFVQVDRTMSDLVFIGDGPDKTVITGEKSFQDGITTYRTATVAIIGDRFIAKNMGFQNTA GAAKHQAVGIRVLSDQSIFYNCRFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCILLVRKPLPNQACPITAHGREDPKETTGFVLQGCTIA GEADYLAVKETSKAYLGRPWKAYSKTIIMDTFIPDFIAAEGWQQWKGNFGIDTLFYSEARNTGPGAGVTGRVTWPGIKKLSDEDILGYTPAKYIQG |
Full Sequence |
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Protein Sequence Length: 677 Download |
MISISSVLLV SMVVAVTIGV NVNNHDNGSK EEITASVKAI KEVCAPTDYK KTCEDTLRKD 60 AKDTSDPLEL VRAAFNVTMK QITNVARKSQ TMIELQKDPR TKMALDQCKE LMDYAIGELS 120 NSFVELGKFE FHKVDEVLIK VKVWLSATIT HEQTCIDGFK GTKGDAGETI KKALKTAVQL 180 THNALAMVTE MSNYLGQMQF TELSSRRLLA QEPSWVDGRV RRLLTAPLSE VKPDMVVAQD 240 GSGQYKTISE AMQNVPKNKN VTFVVYIKTG VYKEFVQVDR TMSDLVFIGD GPDKTVITGE 300 KSFQDGITTY RTATVAIIGD RFIAKNMGFQ NTAGAAKHQA VGIRVLSDQS IFYNCRFDGY 360 QDTLYAHSHR QFYRDCTISG TIDFLFGDAA AVFQNCILLV RKPLPNQACP ITAHGREDPK 420 ETTGFVLQGC TIAGEADYLA VKETSKAYLG RPWKAYSKTI IMDTFIPDFI AAEGWQQWKG 480 NFGIDTLFYS EARNTGPGAG VTGRVTWPGI KKLSDEDILG YTPAKYIQGD EWIPSKGVPY 540 TPGLFAGTGL ATVAASSNST QAGSSSNTTG TGPATAPQAG SSSNTTGSGP AAAPQASSSS 600 NTTGSGPTAA PGVSAVTNTT GLGSPSATPS ASPSPSTSPP AITSASPSAS PSATPSATPP 660 SASPSIISPS ASTPST* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 1.0e-151 | 15 | 544 | 548 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-178 | 234 | 530 | 298 | + Pectinesterase. | ||
PLN02217 | PLN02217 | 0 | 15 | 552 | 539 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02990 | PLN02990 | 0 | 23 | 541 | 531 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 38 | 545 | 523 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42986.1 | 0 | 22 | 676 | 38 | 651 | putative pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_187212.1 | 0 | 22 | 672 | 38 | 652 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_198139.1 | 0 | 22 | 653 | 39 | 679 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002512459.1 | 0 | 24 | 544 | 47 | 579 | Pectinesterase precursor, putative [Ricinus communis] |
RefSeq | XP_002516960.1 | 0 | 27 | 545 | 55 | 577 | Pectinesterase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 229 | 544 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 234 | 545 | 4 | 316 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 8e-20 | 245 | 535 | 18 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-20 | 245 | 535 | 18 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-19 | 245 | 535 | 18 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |