y
Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10025567m |
Family | CE8 |
Protein Properties | Length: 588 Molecular Weight: 64139.4 Isoelectric Point: 9.3436 |
Chromosome | Chromosome/Scaffold: 4 Start: 14643262 End: 14645102 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 276 | 569 | 0 |
FVVAKDGSGQFKTVQAAVNACPEKNPGRCIIHIKAGVYREQVIIPKKKNNIFMFGDGARKTVITYNRSVGLSPGTTTSLSATVQVESEGFMAKWIGFKNT AGPLGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNSLIVVRKGSKGQYNTVTADGNEIGFAVKIGIVLQNCR IVPDRKLTPERLTVASYLGRPWKKFSTTVIVNTEMGDLIRPEGWRIWDGESFHESCKYIEYNNRGPGAINNRRANWAKIARSAAEVNDFAVPNW |
Full Sequence |
---|
Protein Sequence Length: 588 Download |
MIGKVVVSVA SILLIVGVVI GVVAFMNKNG DTNLSPQMKA VQGICQSTSD KASCVKTLEP 60 VKSEDPNKLI KAFLLATKDA ITKSSNFTGK TEGNMGSSIS PNNKAVLDYC KRVFMYALED 120 LATIIEEMGE DLNQIGSKFD QLKQWITGVY NYQTDCLDDI EEKDLRKTIE DGIVDSKILT 180 RNAIDIFHTV VSAMAKLNNK VDEFKNTTGE TPVNKGAPPV VDESPVADPD GPARRLLEDM 240 DQTKIPTWVS GADRKLMARA GRGRSGGGSG SIRATFVVAK DGSGQFKTVQ AAVNACPEKN 300 PGRCIIHIKA GVYREQVIIP KKKNNIFMFG DGARKTVITY NRSVGLSPGT TTSLSATVQV 360 ESEGFMAKWI GFKNTAGPLG HQAAAIRVNG DRAVIFNCRF DGYQDTLYVN NGRQFYRNCV 420 VSGTVDFIFG KSATVIQNSL IVVRKGSKGQ YNTVTADGNE IGFAVKIGIV LQNCRIVPDR 480 KLTPERLTVA SYLGRPWKKF STTVIVNTEM GDLIRPEGWR IWDGESFHES CKYIEYNNRG 540 PGAINNRRAN WAKIARSAAE VNDFAVPNWL GPINWIQEAN VPVTLGL* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 2.0e-103 | 39 | 584 | 557 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 5.0e-108 | 28 | 587 | 564 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-135 | 277 | 571 | 301 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 9.0e-136 | 39 | 587 | 560 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02197 | PLN02197 | 0 | 1 | 587 | 589 | + pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV91508.1 | 0 | 28 | 587 | 28 | 595 | VANGUARD 1 [Arabidopsis thaliana] |
GenBank | AAV91509.1 | 0 | 28 | 587 | 28 | 588 | VGD1-like protein 1 [Arabidopsis thaliana] |
EMBL | CAB58974.1 | 0 | 28 | 587 | 28 | 595 | pectin methylesterase [Arabidopsis thaliana] |
RefSeq | NP_182226.1 | 0 | 28 | 587 | 28 | 588 | VGDH1; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_182227.1 | 0 | 28 | 587 | 28 | 595 | VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 269 | 587 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 272 | 587 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-21 | 277 | 543 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-21 | 277 | 543 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-21 | 277 | 543 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |