y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011682m |
Family | CE8 |
Protein Properties | Length: 564 Molecular Weight: 62037.2 Isoelectric Point: 9.3501 |
Chromosome | Chromosome/Scaffold: 084059 Start: 1509 End: 3500 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 252 | 546 | 0 |
AVVAQDGSGQFKSIQQAVDAMPKAHQGRYVIYVKAGLYDEIVMIPKDKVNIFMYGDGPKRSRVTGRKSFADGITTMKTATFSIEASGFICKNMGFHNTAG AERHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIITRRPMDNQQNSVTAHGRTDPNMKSGLVIQNCRLVP DQKLFPDRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLYYAEYNNRGPGAGTSMRVKWPGFRVITRKEAEQFTAGPFIDG |
Full Sequence |
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Protein Sequence Length: 564 Download |
MSKALLGGLS AILVVAVVVG VVATVTRSGK KAGDNFTVPG EASLATSGKS VKSLCAPTLY 60 KESCEKTLSQ ANNGTENPKD VFHSVAKVAL ESVKSAVEQS KAIGEAKSSK DPMTEGARED 120 CKNLLEDAVD DLRGMLEMAG GDIKVLFSRS DDLETWLTGV MTFMDTCIDG FVDEKLRADM 180 HAVLRNATEL SSNALAITNS LGGLLKKIDL DMFKKDSRRR LLSEEDEKGF PVWMRSPERK 240 LLAAGNQPKP NAVVAQDGSG QFKSIQQAVD AMPKAHQGRY VIYVKAGLYD EIVMIPKDKV 300 NIFMYGDGPK RSRVTGRKSF ADGITTMKTA TFSIEASGFI CKNMGFHNTA GAERHQAVAL 360 RVQGDLAAFY NCRFDAFQDT LYVHARRQFF RNCVISGTID FIFGNSAAVF QNCLIITRRP 420 MDNQQNSVTA HGRTDPNMKS GLVIQNCRLV PDQKLFPDRF KIPSYLGRPW KEFSRLVIME 480 STIADFIKPE GYMPWNGDFG IKTLYYAEYN NRGPGAGTSM RVKWPGFRVI TRKEAEQFTA 540 GPFIDGGLWL KFTGTPNILG FKF* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 4.0e-166 | 44 | 556 | 520 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 9.0e-167 | 30 | 557 | 544 | + pectinesterase | ||
PLN02468 | PLN02468 | 2.0e-178 | 32 | 556 | 527 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 48 | 560 | 526 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 251 | 546 | 297 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF79975.1 | 0 | 27 | 563 | 27 | 563 | unknown [Zea mays] |
EMBL | CAH67075.1 | 0 | 27 | 562 | 28 | 567 | OSIGBa0097P08.5 [Oryza sativa (indica cultivar-group)] |
GenBank | EAY94388.1 | 0 | 27 | 562 | 28 | 567 | hypothetical protein OsI_16156 [Oryza sativa Indica Group] |
RefSeq | NP_001052981.1 | 0 | 27 | 562 | 28 | 567 | Os04g0458900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002447958.1 | 0 | 27 | 562 | 27 | 562 | hypothetical protein SORBIDRAFT_06g018850 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 250 | 561 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 251 | 561 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 9e-25 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 9e-25 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 9e-25 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |