y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10013730m |
Family | GH5 |
Protein Properties | Length: 400 Molecular Weight: 44967 Isoelectric Point: 7.9773 |
Chromosome | Chromosome/Scaffold: 2 Start: 40726 End: 42560 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 12 | 347 | 2.1e-36 |
NGQPFYVNGFNTYWMMTLAADNSTRGKVTDVFQQASAVGLTVGRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWNDYGGKA QYVKWGNASGLNLTSDDDFFTNPTLRDFYKAHVRTVLNRVNTFTNITYKNDPTIFAWELMNEPRCPSDPSGDKLQSWIQEMAVFVKSLDAKHLVEIGLEG FYGPSAPARTKFNPNPYAAQVGTDFIRNNQVLGIDFASVHVYPDSWISPAVSDSFLEFTSSWMQAHVEDAEMYLGMPVLFTEFGVSAHDPGFNTSFRDMM LDTVYKMTLNSTRKGGAGAGSLVWQVFPQGAEFMDD |
Full Sequence |
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Protein Sequence Length: 400 Download |
MVQRKGMQFT LNGQPFYVNG FNTYWMMTLA ADNSTRGKVT DVFQQASAVG LTVGRTWAFN 60 DGQWRALQKS PSVYDEDVFK ALDFVVSEAR KYKIRLILSL VNNWNDYGGK AQYVKWGNAS 120 GLNLTSDDDF FTNPTLRDFY KAHVRTVLNR VNTFTNITYK NDPTIFAWEL MNEPRCPSDP 180 SGDKLQSWIQ EMAVFVKSLD AKHLVEIGLE GFYGPSAPAR TKFNPNPYAA QVGTDFIRNN 240 QVLGIDFASV HVYPDSWISP AVSDSFLEFT SSWMQAHVED AEMYLGMPVL FTEFGVSAHD 300 PGFNTSFRDM MLDTVYKMTL NSTRKGGAGA GSLVWQVFPQ GAEFMDDGYA VYLTRAHTAS 360 KIISLQSKRL AIFNSLCGWR CKWGCKKKNH TALDALLSH* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.003 | 158 | 253 | 107 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
COG2730 | BglC | 0.0003 | 55 | 315 | 282 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 7.0e-6 | 12 | 306 | 305 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 5.0e-25 | 4 | 343 | 343 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18019.1 | 0 | 1 | 399 | 72 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195813.1 | 0 | 1 | 399 | 47 | 445 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | XP_002273389.1 | 0 | 1 | 399 | 11 | 407 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323680.1 | 0 | 1 | 399 | 17 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528703.1 | 0 | 1 | 397 | 73 | 468 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 2 | 371 | 7 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 11 | 349 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 11 | 349 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 11 | 349 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 11 | 349 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CF652410 | 275 | 98 | 372 | 0 |
EX040273 | 271 | 129 | 399 | 0 |
DT747977 | 293 | 1 | 293 | 0 |
JK987915 | 289 | 1 | 289 | 0 |
EL450176 | 267 | 14 | 280 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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