y
Basic Information | |
---|---|
Species | Picea abies |
Cazyme ID | MA_111906g0010 |
Family | GH5 |
Protein Properties | Length: 430 Molecular Weight: 47445.2 Isoelectric Point: 5.9719 |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH5 | 41 | 363 | 4.9e-35 |
VNGNPLFVNGFNSYWLMTLATDPAKRNKVTSVFEQAAAHGLNVARTWAFNDGQEEALQTSPGVYDEQVFQALDFVVSEANKYGIRVILSLVNNYETFGGK AQYVQWSRNAGQNLNSEDDFFTDPTVKGYYKNHVKTVLTRVNSITGVAYKDDSTVFAWELMNEPRCLSDTSGRTIQGWIEEMAGHVKSIDGNHLLEAGLE GFYGESKREINPGPGLSVGTDFITNNQITGLDFATVHSYPDVWLAGSDEEAQLSFMQSWIESHLEDGSRILKKPVLIAEFGKSSKDPGFGMGERDNLFDA IYKQIYASARSGGAGGGAVFWQL |
Full Sequence |
---|
Protein Sequence Length: 430 Download |
MGGVVQMSFW VLACLFFLSF LQQAAEGGSA FVKTEGTHFS VNGNPLFVNG FNSYWLMTLA 60 TDPAKRNKVT SVFEQAAAHG LNVARTWAFN DGQEEALQTS PGVYDEQVFQ ALDFVVSEAN 120 KYGIRVILSL VNNYETFGGK AQYVQWSRNA GQNLNSEDDF FTDPTVKGYY KNHVKTVLTR 180 VNSITGVAYK DDSTVFAWEL MNEPRCLSDT SGRTIQGWIE EMAGHVKSID GNHLLEAGLE 240 GFYGESKREI NPGPGLSVGT DFITNNQITG LDFATVHSYP DVWLAGSDEE AQLSFMQSWI 300 ESHLEDGSRI LKKPVLIAEF GKSSKDPGFG MGERDNLFDA IYKQIYASAR SGGAGGGAVF 360 WQLMVEGMSS YGDGYEVVLS QNPSTAAIIS GQSNKLDVLT HMFTKMYASE KKRQVHAHRR 420 GRLHRKSVKG 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd11315 | AmyAc_bac1_AmyA | 0.001 | 105 | 169 | 65 | + Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
COG2730 | BglC | 4.0e-6 | 71 | 220 | 154 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 2.0e-8 | 42 | 341 | 310 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 6.0e-23 | 71 | 337 | 272 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF69949.1 | 0 | 28 | 423 | 22 | 417 | (1-4)-beta-mannan endohydrolase (mannan endo-1,4-beta-mannosidase), putative [Musa acuminata] |
RefSeq | XP_002264115.1 | 0 | 21 | 421 | 19 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270023.1 | 0 | 8 | 402 | 9 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272344.1 | 0 | 15 | 402 | 13 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002281804.1 | 0 | 7 | 422 | 1 | 421 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 31 | 400 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 36 | 388 | 18 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 36 | 388 | 18 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 36 | 388 | 18 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 36 | 388 | 18 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |