y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 491940 |
Family | GH5 |
Protein Properties | Length: 432 Molecular Weight: 49934.9 Isoelectric Point: 7.9548 |
Chromosome | Chromosome/Scaffold: 7 Start: 5810551 End: 5812529 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 53 | 378 | 3e-33 |
DKPLYVNGWNSYWFMDHAVDEHSRNLVGEMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFQALDHVIAEARKHDVRLLLSLVNNLQAYGGKTQ YVNWAWQEGVGVSSSNDSFFFDPSIRNYFKNYLKVLLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSGKTLQDWIDEMTGFIKSIDDKHLLTVGLEG FYGPNSPKRLTVNPEQWASELGTDFVQNSNSSNIDFASVHIYPDHWFHNQTFEEKLKFVVKWMQSHIEDGFKELKKPVLFTEFGLSNLNKDYEPSQRDKF YRIIFDVIYKSAKRKKSGAGTLVWQL |
Full Sequence |
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Protein Sequence Length: 432 Download |
MVPTRNRPML RILGFFICAA FIYLSFRDLW LNHKGKAKLG FVKRNGTQFV VDDKPLYVNG 60 WNSYWFMDHA VDEHSRNLVG EMLEAGAKMG LTVCRTWAFN DGGYNALQIS PGRFDERVFQ 120 ALDHVIAEAR KHDVRLLLSL VNNLQAYGGK TQYVNWAWQE GVGVSSSNDS FFFDPSIRNY 180 FKNYLKVLLT RKNSVTGIEY RNDPTIFAWE LINEPRCTTD VSGKTLQDWI DEMTGFIKSI 240 DDKHLLTVGL EGFYGPNSPK RLTVNPEQWA SELGTDFVQN SNSSNIDFAS VHIYPDHWFH 300 NQTFEEKLKF VVKWMQSHIE DGFKELKKPV LFTEFGLSNL NKDYEPSQRD KFYRIIFDVI 360 YKSAKRKKSG AGTLVWQLFM EGMETFSDDF GIVPHEQDSI YKLMIEQSCR LGKVTGRLKE 420 QNLKELCSHK H* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.004 | 199 | 294 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 2.0e-7 | 202 | 348 | 149 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 1.0e-24 | 83 | 396 | 315 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD20927.1 | 0 | 2 | 430 | 3 | 402 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
GenBank | ABK95966.1 | 0 | 12 | 431 | 14 | 435 | unknown [Populus trichocarpa] |
RefSeq | NP_179660.2 | 0 | 2 | 430 | 3 | 432 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | NP_194561.1 | 0 | 1 | 431 | 1 | 431 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330687.1 | 0 | 12 | 431 | 14 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 41 | 415 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 75 | 394 | 41 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 75 | 394 | 41 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 75 | 394 | 41 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 75 | 394 | 41 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |