y
Basic Information | |
---|---|
Species | Brassica rapa |
Cazyme ID | Bra001383 |
Family | GH5 |
Protein Properties | Length: 416 Molecular Weight: 46181.3 Isoelectric Point: 7.6115 |
Chromosome | Chromosome/Scaffold: 03 Start: 16100411 End: 16102448 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH5 | 42 | 370 | 2.2e-34 |
NGEPFYANGFNAYWLMYEATDPNTRYKVTHALENAAGQGLTIARTWGFRDGGYRALQTNLGSYDEQTFQGLDFAIAEAKRVGIKMIIAFVNNFPDFGGKK QYMAWAKDKGQAVTSEDDFYTNALLKQAYMNHVKTVLNRVNTFTKVAYKDEPTIMAWELMNEPQCRADTSGKTLTAWISEMASYVKSLDSKHLLSTGSEG FYGQSTPQRMTSLNPVAANIVGSDFIANHNIDAIDFASVHSYPDTWFPKLDEKSLLDYLRKNLAGHIEDAQNVLKKPLILGEFGKPSNAPGYTQAQRDAV FTTAFDIIYASAQKGGAAAGALFWHLISD |
Full Sequence |
---|
Protein Sequence Length: 416 Download |
MKCLCLIVFL AFVITQSYND LEVEAVSSDG FVSRKGVQFI LNGEPFYANG FNAYWLMYEA 60 TDPNTRYKVT HALENAAGQG LTIARTWGFR DGGYRALQTN LGSYDEQTFQ GLDFAIAEAK 120 RVGIKMIIAF VNNFPDFGGK KQYMAWAKDK GQAVTSEDDF YTNALLKQAY MNHVKTVLNR 180 VNTFTKVAYK DEPTIMAWEL MNEPQCRADT SGKTLTAWIS EMASYVKSLD SKHLLSTGSE 240 GFYGQSTPQR MTSLNPVAAN IVGSDFIANH NIDAIDFASV HSYPDTWFPK LDEKSLLDYL 300 RKNLAGHIED AQNVLKKPLI LGEFGKPSNA PGYTQAQRDA VFTTAFDIIY ASAQKGGAAA 360 GALFWHLISD DMSNFTDAYS ISLSEKSSTI TIIGQQSRKM NLIGRKRKPG RENKI* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.0002 | 191 | 345 | 167 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-27 | 34 | 331 | 306 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABB45852.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein [Thellungiella halophila] |
RefSeq | NP_187700.1 | 0 | 1 | 408 | 1 | 408 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_187701.1 | 0 | 1 | 408 | 1 | 407 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_189675.1 | 0 | 1 | 350 | 1 | 333 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
RefSeq | NP_201447.1 | 0 | 1 | 403 | 1 | 400 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 27 | 401 | 2 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 30 | 367 | 13 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 30 | 367 | 13 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 30 | 367 | 13 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 30 | 367 | 13 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |