y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra026266 |
Family | GH5 |
Protein Properties | Length: 432 Molecular Weight: 49992.9 Isoelectric Point: 7.6546 |
Chromosome | Chromosome/Scaffold: 01 Start: 10297937 End: 10299595 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 52 | 378 | 7.6e-35 |
DGKALYVNGWNSYWFMDHAVNEHSRYLVSEMLETGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKKHDVRLLLCLVNNLQAYGGKS QYVQWAWQEGVGLSSSNDSFFFDPSIRKYFKNYLTALLTRKNSVTGIEYRNDPTIFAWELINEPRCTSDVSGDTLQDWIDEMTSFIKSIDDKHLLTVGLE GFYGPNSPKRLTVNPEMWPSELGTDFVRNSNSSNIDFASVHIYPDHWFHNQTFEDKLKFVVQWMQSHIEDGMKELKKPVLFTEFGLSNLNKDYEPSQRER FYRTIFDVVYKSAKRRKAGAGTLVWQL |
Full Sequence |
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Protein Sequence Length: 432 Download |
MVPARNGSAI PVLGFLICAA FIYLSFRDLW LNHKWRTEIG FVKRNGTQFV VDGKALYVNG 60 WNSYWFMDHA VNEHSRYLVS EMLETGAKMG LTVCRTWAFN DGGYNALQIS PGRFDERVFK 120 ALDHVIAEAK KHDVRLLLCL VNNLQAYGGK SQYVQWAWQE GVGLSSSNDS FFFDPSIRKY 180 FKNYLTALLT RKNSVTGIEY RNDPTIFAWE LINEPRCTSD VSGDTLQDWI DEMTSFIKSI 240 DDKHLLTVGL EGFYGPNSPK RLTVNPEMWP SELGTDFVRN SNSSNIDFAS VHIYPDHWFH 300 NQTFEDKLKF VVQWMQSHIE DGMKELKKPV LFTEFGLSNL NKDYEPSQRE RFYRTIFDVV 360 YKSAKRRKAG AGTLVWQLFM EGMEGFNDEF GIVPHEQDPM YRLMVEQSCR LGKVTGRREE 420 HKLRKLCSHK H* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3934 | COG3934 | 0.009 | 181 | 358 | 200 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 4.0e-8 | 177 | 348 | 174 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-25 | 63 | 396 | 340 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD20927.1 | 0 | 2 | 430 | 3 | 402 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
GenBank | ABK95966.1 | 0 | 4 | 431 | 6 | 435 | unknown [Populus trichocarpa] |
RefSeq | NP_179660.2 | 0 | 2 | 430 | 3 | 432 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | NP_194561.1 | 0 | 1 | 431 | 1 | 431 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330687.1 | 0 | 4 | 431 | 6 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 41 | 415 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |