y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G109900.1 |
Family | GH5 |
Protein Properties | Length: 519 Molecular Weight: 58510.3 Isoelectric Point: 6.0935 |
Chromosome | Chromosome/Scaffold: 06 Start: 8571635 End: 8574617 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 131 | 464 | 1.6e-31 |
NDQPFYVNGFNTYWLMVFAADQSTRGKVTEVFQQASSVGLTVCRTWAFNDGQWRALQKSPGVYDEDVFKLALDFVVSEAKKYKIRLILSLTNNWDAYGGK AQYVKWGKATGLNLTSDDDFFSHPTLRSYYKAHAVLNRVNTLTNITYKDDPTIFAWELMNEPRCTSDPSGDKLQSWITDMAVYVKSMDAKHLVEIGLEGF YGPSAPDRAQFNPNSYATQVGTDFIRNHQVLGVDFASVHIYADSWISLTISDSHIQFIKSWMEAHIEDAERYLGMPVVFAEFGVSSKDPGYNTSFRDTMI NTVYKTLLNSTKRGGSGAGSLLWQIFPDGTDYMD |
Full Sequence |
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Protein Sequence Length: 519 Download |
MRHKTFKSSS QQISLVLLTF LSALLYFPRL LSAEKWCLSI SVHCLSIYRF ILSCICLYIC 60 LLLTSAIVSR RCSDLEVSFG VMDGDQWDTT AEEVDNHLPS SSSSQGAYEL NDVGEDEWQM 120 VARKGNQFVI NDQPFYVNGF NTYWLMVFAA DQSTRGKVTE VFQQASSVGL TVCRTWAFND 180 GQWRALQKSP GVYDEDVFKL ALDFVVSEAK KYKIRLILSL TNNWDAYGGK AQYVKWGKAT 240 GLNLTSDDDF FSHPTLRSYY KAHAVLNRVN TLTNITYKDD PTIFAWELMN EPRCTSDPSG 300 DKLQSWITDM AVYVKSMDAK HLVEIGLEGF YGPSAPDRAQ FNPNSYATQV GTDFIRNHQV 360 LGVDFASVHI YADSWISLTI SDSHIQFIKS WMEAHIEDAE RYLGMPVVFA EFGVSSKDPG 420 YNTSFRDTMI NTVYKTLLNS TKRGGSGAGS LLWQIFPDGT DYMDDGYAIV LSKSPSTSNI 480 ISLHSTRVAI FNSMCSWKCK WGCKKKNPLE ALFYHDDL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.0006 | 277 | 433 | 165 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-23 | 161 | 484 | 333 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18019.1 | 0 | 51 | 518 | 12 | 471 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 110 | 518 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309191.1 | 0 | 107 | 518 | 4 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323680.1 | 0 | 108 | 518 | 5 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528703.1 | 0 | 85 | 518 | 37 | 473 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 120 | 489 | 6 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 129 | 480 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 129 | 480 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 129 | 480 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 129 | 480 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |