y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015594m |
Family | GH5 |
Protein Properties | Length: 417 Molecular Weight: 46186.2 Isoelectric Point: 8.8398 |
Chromosome | Chromosome/Scaffold: 3 Start: 3478246 End: 3479899 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 42 | 368 | 5.6e-35 |
NGKPFYANGFNAYWLTYEATDPTARYKITHGFENATSRGLTIARTWGFNDGASYRALQTAPGSYDENTFQGLDFVISEAKRVGLKMIIPLVNNWSDYGGK KQYVDWAKSKGEKVSSDDDFYTNSLTKQFYKNHVKTIVNRVNTFTKVAYKDEPAIMGWELMNEPRCNSDRSGKTLMAWINEMAPYVKSVDPNHLLSTGHE GFYGDSSPQRKTSLNPPSANVVGADFIANHNIDAIDFASIHCAPDLWFQKLDQNTRLNFLKKWLEGHIEDAQNILKKPLIVGEFGVGTDVPGYTLAKRDA IFTATYEIIYASAQKGGSGGGALFWDL |
Full Sequence |
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Protein Sequence Length: 417 Download |
MKYLCFVVFL AIVIAQNYSD LGVEAASSGG FVSRKGVQFI LNGKPFYANG FNAYWLTYEA 60 TDPTARYKIT HGFENATSRG LTIARTWGFN DGASYRALQT APGSYDENTF QGLDFVISEA 120 KRVGLKMIIP LVNNWSDYGG KKQYVDWAKS KGEKVSSDDD FYTNSLTKQF YKNHVKTIVN 180 RVNTFTKVAY KDEPAIMGWE LMNEPRCNSD RSGKTLMAWI NEMAPYVKSV DPNHLLSTGH 240 EGFYGDSSPQ RKTSLNPPSA NVVGADFIAN HNIDAIDFAS IHCAPDLWFQ KLDQNTRLNF 300 LKKWLEGHIE DAQNILKKPL IVGEFGVGTD VPGYTLAKRD AIFTATYEII YASAQKGGSG 360 GGALFWDLIT DGMSNYKDPS AILLSEGSST VNIISEATRK LGSINTKVKF SRKIKN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.0006 | 189 | 272 | 93 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 7.0e-9 | 42 | 328 | 293 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-30 | 34 | 345 | 317 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABB45852.1 | 0 | 1 | 401 | 1 | 398 | hypothetical protein [Thellungiella halophila] |
RefSeq | NP_187700.1 | 0 | 1 | 412 | 1 | 411 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_187701.1 | 0 | 1 | 402 | 1 | 400 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_189675.1 | 0 | 1 | 364 | 1 | 346 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
RefSeq | NP_201447.1 | 0 | 1 | 414 | 1 | 408 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 27 | 405 | 2 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 30 | 378 | 13 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 30 | 378 | 13 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 30 | 378 | 13 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 30 | 378 | 13 | 352 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |