y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00037971m |
Family | GH5 |
Protein Properties | Length: 453 Molecular Weight: 50322 Isoelectric Point: 6.7422 |
Chromosome | Chromosome/Scaffold: 000518 Start: 12143 End: 14078 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 67 | 400 | 5.6e-33 |
GEPFYPNGWNSYWLMDQAVEPRSRDRVSRMFRAAAEMGLTVCRSWAFNDGAYNALQVSPGHFDERVFKALDRVLVEAGRHGVRLILSLANNLEAYGGKTQ YVRWAWEEGVGLSASNDSFFFDPAIRDYFKVYLKTLLTRKNHLTGVEYRDDPTILAWELMNEPRCTTDLSGDTLQRWIEEMAVYVKSIDRKHLLTVGAEG FYGPTSPPSKLDVNPGTWKDNNYGSDFIRNAKIPDIDFASIHLYPDTWLLKQRATAEEKLEFAKRWVASHIEDGDTELGKPVLTTEFGLSKRAQGFDPSH RDVLYRAIYDIVYGSAARGGAGAAAFVWQLAPEG |
Full Sequence |
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Protein Sequence Length: 453 Download |
MAFGGGLAMY HVLGVATCVA LLYFTFGAVD LRHISLPSLP GSGASPRAAA VAAPFVERRG 60 AQLFLEGEPF YPNGWNSYWL MDQAVEPRSR DRVSRMFRAA AEMGLTVCRS WAFNDGAYNA 120 LQVSPGHFDE RVFKALDRVL VEAGRHGVRL ILSLANNLEA YGGKTQYVRW AWEEGVGLSA 180 SNDSFFFDPA IRDYFKVYLK TLLTRKNHLT GVEYRDDPTI LAWELMNEPR CTTDLSGDTL 240 QRWIEEMAVY VKSIDRKHLL TVGAEGFYGP TSPPSKLDVN PGTWKDNNYG SDFIRNAKIP 300 DIDFASIHLY PDTWLLKQRA TAEEKLEFAK RWVASHIEDG DTELGKPVLT TEFGLSKRAQ 360 GFDPSHRDVL YRAIYDIVYG SAARGGAGAA AFVWQLAPEG MEEYHDDYSV VPSEHPSLRR 420 LIKEQSCRLA KLRRGAGEEA KRALAACAAG SS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.007 | 213 | 310 | 107 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 0.0001 | 216 | 379 | 170 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 8.0e-27 | 128 | 414 | 290 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY75800.1 | 0 | 1 | 449 | 1 | 445 | hypothetical protein OsI_03716 [Oryza sativa Indica Group] |
RefSeq | NP_001044230.1 | 0 | 1 | 444 | 1 | 439 | Os01g0746700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130322.1 | 0 | 1 | 452 | 1 | 453 | hypothetical protein LOC100191416 [Zea mays] |
Swiss-Prot | Q0JJD4 | 0 | 1 | 449 | 1 | 445 | MAN2_ORYSJ RecName: Full=Mannan endo-1,4-beta-mannosidase 2; AltName: Full=Beta-mannanase 2; AltName: Full=Endo-beta-1,4-mannanase 2; AltName: Full=OsMAN2; Flags: Precursor |
RefSeq | XP_002458478.1 | 0 | 1 | 452 | 1 | 461 | hypothetical protein SORBIDRAFT_03g034420 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 55 | 432 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 59 | 412 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 59 | 412 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 59 | 412 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 59 | 412 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |