y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000252855 |
Family | GH5 |
Protein Properties | Length: 429 Molecular Weight: 48336.2 Isoelectric Point: 8.9008 |
Chromosome | Chromosome/Scaffold: 013295244 Start: 11452 End: 14241 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 39 | 332 | 1.2e-31 |
GVPYYGHGFNAYWLMYMGTDPSERVKVSSALREAKEHGLTIARTWAFADGGYRALQTSPGSYDEKTFRGLDFVISEAKKSGIKVILSLVNNYXNYGGKKQ YVEWARSQGQSLSSEDDFYTNSXVKGFYKNHIKTVXTRINTLXGVAYKDEPTIMAWELMNEPRCTSDPSGKTIQAWITEMASYLKSIDGNHLLEVGLEGF YGSSNPKKNPNNYQIGTDFIANNQIRDIDFATVHAYPDQWLTGAGYEDQVSFLNSWVSGHIQDAQNILKKPVLFAEFGRSLKESGYTTSQRDRI |
Full Sequence |
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Protein Sequence Length: 429 Download |
MKHLGVMFLG ALLFIFQNHG VLAEEGFMKT RGVQLXLNGV PYYGHGFNAY WLMYMGTDPS 60 ERVKVSSALR EAKEHGLTIA RTWAFADGGY RALQTSPGSY DEKTFRGLDF VISEAKKSGI 120 KVILSLVNNY XNYGGKKQYV EWARSQGQSL SSEDDFYTNS XVKGFYKNHI KTVXTRINTL 180 XGVAYKDEPT IMAWELMNEP RCTSDPSGKT IQAWITEMAS YLKSIDGNHL LEVGLEGFYG 240 SSNPKKNPNN YQIGTDFIAN NQIRDIDFAT VHAYPDQWLT GAGYEDQVSF LNSWVSGHIQ 300 DAQNILKKPV LFAEFGRSLK ESGYTTSQRD RIFTIVYSGI YSSARGGGAA VGGLFWQLLA 360 EEMDNFQDGY GIVLSESSST VGLIAEESRK LNEIRKMYAR LKNIEKWKRA REVRRDRFWS 420 GNKANGTEN 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd11315 | AmyAc_bac1_AmyA | 0.001 | 84 | 169 | 111 | + Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
pfam02449 | Glyco_hydro_42 | 0.001 | 73 | 207 | 149 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam00150 | Cellulase | 2.0e-7 | 35 | 328 | 303 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 4.0e-23 | 48 | 318 | 278 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32547.1 | 0 | 1 | 429 | 1 | 431 | endo-1,4-beta-mannosidase protein 1 [Prunus persica] |
GenBank | ACN78663.1 | 0 | 2 | 429 | 1 | 428 | endo-beta-mannanase [Malus x domestica] |
GenBank | ACN78664.1 | 0 | 1 | 429 | 1 | 429 | endo-beta-mannanase [Malus x domestica] |
RefSeq | XP_002281804.1 | 0 | 9 | 429 | 6 | 433 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002510418.1 | 0 | 1 | 429 | 1 | 432 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 22 | 394 | 1 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 28 | 370 | 14 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 28 | 370 | 14 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 28 | 370 | 14 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 28 | 370 | 14 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |