y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016461m |
Family | GH5 |
Protein Properties | Length: 435 Molecular Weight: 48732 Isoelectric Point: 6.326 |
Chromosome | Chromosome/Scaffold: 3 Start: 3470959 End: 3472982 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 43 | 369 | 7.1e-36 |
NGKPFYANGFNAYWLTYEATDPTARFKITYAFQNATSHGLAIARTWGFRDGAIYRGLQTAPGTYDEKSFQGLDFVIAEAKRLGLKMIITFVNNYSDFGGR KQYVDWAKTSGQNVSSDDDFYTNPLVKQYYKNHVMTMVNRLNTITKVAYKDEPTIMGWELINEPQCRADPSGKTLMAWIEEMAPYVKSVDSNHLLSTGLE GFYGDSSPQRKATLNPDAANVLGTDFIANHNIDAIDFASIHSYPDLWFPNLDEKSRLDFLRKWLEAHIEDAQNVLRKPLIIGEFGKPTNTPGYTQDQRDT VFKATYDTVYESAQKGGAATGAWFWHL |
Full Sequence |
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Protein Sequence Length: 435 Download |
MKYLSFVVFL AIVIAQNHTD LGGVEAASSD GFVGRKGVQF ILNGKPFYAN GFNAYWLTYE 60 ATDPTARFKI TYAFQNATSH GLAIARTWGF RDGAIYRGLQ TAPGTYDEKS FQGLDFVIAE 120 AKRLGLKMII TFVNNYSDFG GRKQYVDWAK TSGQNVSSDD DFYTNPLVKQ YYKNHVMTMV 180 NRLNTITKVA YKDEPTIMGW ELINEPQCRA DPSGKTLMAW IEEMAPYVKS VDSNHLLSTG 240 LEGFYGDSSP QRKATLNPDA ANVLGTDFIA NHNIDAIDFA SIHSYPDLWF PNLDEKSRLD 300 FLRKWLEAHI EDAQNVLRKP LIIGEFGKPT NTPGYTQDQR DTVFKATYDT VYESAQKGGA 360 ATGAWFWHLI SDGMDNFKDS LAIVLSDNSS TVNIISEDSR KLSLLFRKES INTLATVNDL 420 ILKDKKLSYI QSLK* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.002 | 190 | 285 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 4.0e-6 | 103 | 339 | 240 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 8.0e-30 | 35 | 333 | 305 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABB45852.1 | 0 | 1 | 405 | 1 | 401 | hypothetical protein [Thellungiella halophila] |
RefSeq | NP_187700.1 | 0 | 1 | 405 | 1 | 403 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_187701.1 | 0 | 1 | 405 | 1 | 402 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
RefSeq | NP_189675.1 | 0 | 1 | 353 | 1 | 334 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
RefSeq | NP_201447.1 | 0 | 1 | 405 | 1 | 400 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 28 | 405 | 2 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 41 | 397 | 21 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 41 | 397 | 21 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 41 | 397 | 21 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 41 | 397 | 21 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |