y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.016G138600.2 |
Family | GH5 |
Protein Properties | Length: 415 Molecular Weight: 46828.7 Isoelectric Point: 5.845 |
Chromosome | Chromosome/Scaffold: 16 Start: 14102924 End: 14105624 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH5 | 28 | 360 | 5.3e-33 |
NDQPFYVNGFNTYWLMVFAADQSTRGKVTEVFQKASSVGLSVCRTWAFNDGQWRALQKSPGVYDEDVFKALDFVVSEANKYKIRLILSLANNWDAYGGKA QYVKWGKASGLNLTSDDDFFSHPTLRSYYKAHAVLNRVNTITNITYKDDPTIFAWELMNEPRCTSDPSGDKLQSWITDMAVYVKSMDAKHLVEIGLEGFY GPSAPDRAQFNPNSYATQVGTDFIRNHQVLGVDFASVHIYADSWISQTITDSHIQFTKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSFRDTLIN TVYKTLLNSTKRGGSGAGSLLWQLFPDGTDYMD |
Full Sequence |
---|
Protein Sequence Length: 415 Download |
MCRVYELNDV EEDEWLMVAK KGNQFVINDQ PFYVNGFNTY WLMVFAADQS TRGKVTEVFQ 60 KASSVGLSVC RTWAFNDGQW RALQKSPGVY DEDVFKALDF VVSEANKYKI RLILSLANNW 120 DAYGGKAQYV KWGKASGLNL TSDDDFFSHP TLRSYYKAHA VLNRVNTITN ITYKDDPTIF 180 AWELMNEPRC TSDPSGDKLQ SWITDMAVYV KSMDAKHLVE IGLEGFYGPS APDRAQFNPN 240 SYATQVGTDF IRNHQVLGVD FASVHIYADS WISQTITDSH IQFTKSWMEA HIEDAEKYLG 300 MPVVFAEFGV SSKDPGYNSS FRDTLINTVY KTLLNSTKRG GSGAGSLLWQ LFPDGTDYMD 360 DGYAIVLSKS PSTTNIISLH STRVAIVNSM CSWKCKWGCK KRNPLEAFLY HDDL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2730 | BglC | 0.002 | 71 | 367 | 320 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 0.0007 | 173 | 314 | 152 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 2.0e-25 | 58 | 380 | 332 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18019.1 | 0 | 4 | 414 | 59 | 471 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 7 | 414 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309191.1 | 0 | 1 | 414 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323680.1 | 0 | 1 | 414 | 1 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528703.1 | 0 | 4 | 414 | 59 | 473 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 17 | 385 | 6 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 26 | 376 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 26 | 376 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 26 | 376 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 26 | 376 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JK987915 | 297 | 9 | 303 | 0 |
DT747977 | 293 | 17 | 307 | 0 |
DY974976 | 274 | 9 | 280 | 0 |
JG000902 | 245 | 157 | 399 | 0 |
FK006634 | 269 | 102 | 368 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|