y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s53_47V6.2 |
Family | GH5 |
Protein Properties | Length: 412 Molecular Weight: 46223.2 Isoelectric Point: 5.8432 |
Chromosome | Chromosome/Scaffold: 53 Start: 217014 End: 220088 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 18 | 342 | 7e-31 |
GRPFYLNGWNSYWLMVNAALADTQPRVDAILRDGAALGLTLCRTWAFNDDSYLALQTLPGTYDEKVFKGLDYVIHQAQINGVRLLLSLVNNWKDFGGKAK YVEWAKAEGEAVADEDDFYRNAKCRQYYRNHVKAVLTRVNTITGVAYRDDPTIFGWELMNEPQCRSDSSGDTLKAWIGEMSAHVKTLDNKHLLTVGTEGY YATDSVGCRSSNPNSYSGTVGTDFIRHHQLPYIDFATAHAYPDQWLSAGDFDATQDFFDRWVRAHIVDAERVLRMPVIFAEFGLSDKKPGFTEQKRDAFF GIVYDQVYQSALKRGAGSGALMWQL |
Full Sequence |
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Protein Sequence Length: 412 Download |
MAMQQFVMRS GNTFMLEGRP FYLNGWNSYW LMVNAALADT QPRVDAILRD GAALGLTLCR 60 TWAFNDDSYL ALQTLPGTYD EKVFKGLDYV IHQAQINGVR LLLSLVNNWK DFGGKAKYVE 120 WAKAEGEAVA DEDDFYRNAK CRQYYRNHVK AVLTRVNTIT GVAYRDDPTI FGWELMNEPQ 180 CRSDSSGDTL KAWIGEMSAH VKTLDNKHLL TVGTEGYYAT DSVGCRSSNP NSYSGTVGTD 240 FIRHHQLPYI DFATAHAYPD QWLSAGDFDA TQDFFDRWVR AHIVDAERVL RMPVIFAEFG 300 LSDKKPGFTE QKRDAFFGIV YDQVYQSALK RGAGSGALMW QLLPLEMSDW NDGYGLAPVC 360 GSSISNVMLR QSVRLRALRQ PMCGIDEGLP LDTCGNVTPH VYDKGLNQIL A* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.002 | 166 | 304 | 141 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 5.0e-25 | 13 | 342 | 332 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21857.1 | 0 | 6 | 375 | 40 | 410 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001760262.1 | 0 | 5 | 410 | 7 | 419 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001762204.1 | 0 | 1 | 384 | 1 | 380 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001784893.1 | 0 | 1 | 378 | 6 | 383 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002273772.1 | 0 | 6 | 375 | 45 | 415 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 6 | 378 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 13 | 342 | 19 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 13 | 342 | 19 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 13 | 342 | 19 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 13 | 342 | 19 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BY946914 | 230 | 1 | 230 | 0 |
DC933365 | 217 | 86 | 302 | 0 |
FC434041 | 295 | 88 | 382 | 0 |
DC947502 | 194 | 219 | 412 | 0 |
DC910302 | 285 | 97 | 381 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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