y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_46.53 |
Family | GT47 |
Protein Properties | Length: 514 Molecular Weight: 58969.2 Isoelectric Point: 10.0166 |
Chromosome | Chromosome/Scaffold: 46 Start: 413808 End: 416047 |
Description | xylogalacturonan deficient 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 178 | 463 | 0 |
KRFKVWVYREGEQPIFHDGPVNNIYSIEGQFIDEMERPYNKFRAPHPDKAHVFFLPLSVAKIIHFVYKPITSVADYSRDRLQRLIADYISVVGDKYPYWN RSSGADHFMASCHDWAPQVSLANPELFKNFIRVLCNANLSEGFRPHIDVSLPEIYLPVGKLGPPSLGLPPNNRSILAFFAGASHGWIRKILLPEWKGKDN DVQVYEKLPKGLDYTRLMGRSRFCLCPSGHEVASPREVEAIYAGCVPVIISVNYSLPFSDILDWSQFSIEIPVEKISEIKTILQSV |
Full Sequence |
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Protein Sequence Length: 514 Download |
MAAINCPTSS LLVLPAFFLL PVFFFVFQSS NFNRNPVINQ FYSSISFTPV RQRLENTYAN 60 NTSLLSTQVF VAGVVSAEGS GIDKRSEKSS SNITEVFAEK ITTQVAQEEE KKEKKKKKKK 120 KKSSGERIEE ELMKARGAIR KAVELKRYES EKKESFVPRG SIYRNPHAFH QSHIEMVKRF 180 KVWVYREGEQ PIFHDGPVNN IYSIEGQFID EMERPYNKFR APHPDKAHVF FLPLSVAKII 240 HFVYKPITSV ADYSRDRLQR LIADYISVVG DKYPYWNRSS GADHFMASCH DWAPQVSLAN 300 PELFKNFIRV LCNANLSEGF RPHIDVSLPE IYLPVGKLGP PSLGLPPNNR SILAFFAGAS 360 HGWIRKILLP EWKGKDNDVQ VYEKLPKGLD YTRLMGRSRF CLCPSGHEVA SPREVEAIYA 420 GCVPVIISVN YSLPFSDILD WSQFSIEIPV EKISEIKTIL QSVSRERYLK MYRRVLMVKR 480 HFVLNRPAKP FDVVHMILHS VWLRRLNFKL SSI* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-58 | 176 | 463 | 307 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABP03872.1 | 0 | 119 | 510 | 73 | 465 | Exostosin-like [Medicago truncatula] |
GenBank | ABP03873.1 | 0 | 86 | 510 | 196 | 613 | Exostosin-like [Medicago truncatula] |
EMBL | CBI21065.1 | 0 | 120 | 510 | 10 | 400 | unnamed protein product [Vitis vinifera] |
EMBL | CBI25537.1 | 0 | 86 | 510 | 46 | 475 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263848.1 | 0 | 120 | 510 | 2 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |