y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si029368m |
Family | GT47 |
Protein Properties | Length: 568 Molecular Weight: 62146.6 Isoelectric Point: 8.3102 |
Chromosome | Chromosome/Scaffold: 2 Start: 5522440 End: 5525805 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 233 | 515 | 0 |
KLFKVYVYEEGEPPVFHDGPCRSIYSTEGRFIYSMEMESRLRTRDPDLAHAFFLPFSVVKMVKMIYEPNSHDMGPLKRTVSDYIGVLSTKYPYWNRSLGA DHFMLSCHDWGPYVSSANGHLFGNSIRVLCNANTSEGFNPSKDVSLPEINLRSDVVDRQVGGPSASRRPILAFFAGGNHGPVRPALLAHWKGKGDPDVQV SEYLPRGVSYTDMMRRSRFCLCPGGYEVASPRLAEAIYLECVPVVIDDGEYALPFADVLNWDAFAVRLPTADIPRLREVLSAV |
Full Sequence |
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Protein Sequence Length: 568 Download |
MRATVPTTSE AACLPCSHGH GRGSAAAAAY AVAACLVAVT FLALAALDPR TQASWFLSSS 60 SSSSSLSSFT SLQPSGGGGG AEHLLVTSSS YSDGGDGGRR NSTGKEVHEE LQVQGGGDDL 120 LLSFANSNSG HDVLQLSVTP PAAPEPKPAP APAPAPAPES SDEAIQATPQ LPRRRDVKLE 180 RLELGLAKAR SAIMEGIRNK DNRPPLADKD YVPMGPIYRN AYAFHKSYLE MEKLFKVYVY 240 EEGEPPVFHD GPCRSIYSTE GRFIYSMEME SRLRTRDPDL AHAFFLPFSV VKMVKMIYEP 300 NSHDMGPLKR TVSDYIGVLS TKYPYWNRSL GADHFMLSCH DWGPYVSSAN GHLFGNSIRV 360 LCNANTSEGF NPSKDVSLPE INLRSDVVDR QVGGPSASRR PILAFFAGGN HGPVRPALLA 420 HWKGKGDPDV QVSEYLPRGV SYTDMMRRSR FCLCPGGYEV ASPRLAEAIY LECVPVVIDD 480 GEYALPFADV LNWDAFAVRL PTADIPRLRE VLSAVSPRQY IRMQRRVRAV RRHFMVHGGA 540 PRRYDAFHMI LHSVWLRRLN VRIAAQG* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-64 | 231 | 515 | 302 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB08605.1 | 0 | 160 | 563 | 6 | 405 | unnamed protein product [Arabidopsis thaliana] |
GenBank | EAZ03045.1 | 0 | 14 | 566 | 11 | 599 | hypothetical protein OsI_25187 [Oryza sativa Indica Group] |
RefSeq | NP_001059081.1 | 0 | 14 | 566 | 11 | 604 | Os07g0188700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459470.1 | 0 | 1 | 567 | 1 | 582 | hypothetical protein SORBIDRAFT_02g005180 [Sorghum bicolor] |
RefSeq | XP_002524591.1 | 0 | 159 | 563 | 102 | 502 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |