y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013790 |
Family | GT47 |
Protein Properties | Length: 572 Molecular Weight: 64006.4 Isoelectric Point: 8.87 |
Chromosome | Chromosome/Scaffold: 1168 Start: 489916 End: 492713 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 232 | 514 | 0 |
EKQFKVFVYEEGEPPVFHNGPCKSIYAMEGNFIHGMEIDPKFRTKDPDKAHMFFLPFSVAMLVQFVYVRDSHDFGPIRRTVADYVELVAKKYPYWNRSLG ADHFMLACHDWGPEASFSVPFLGKNSIRALCNANTSERVNPVKDVSFPEINLRTGTTTGFIGGPSPSKRSILAFFAGGLHGPIRPILLQHWEKKNDEDVR VHQYLPKGISYYDMMRKSKFCLCPSGYEVASPRVVEAIYAGCVPVLISDHYVPPFSDVLNWKAFSVEVSVSEIPNLKTILEGI |
Full Sequence |
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Protein Sequence Length: 572 Download |
MQSQAAIVCS LDSKREMRNN KVKKLCVSAC RMCSSSSNSL KLLWVFVPLI LVYGLVSNFG 60 PTLSGLEVLT TNNGTSKAGM VMVGGGRVES VEEKKMAIIS ADELSLVNRS SSPPVSVHQQ 120 EEQPQPPVIN NQDEGSDLDL LPTSKNQSSA SNPVPNSASV PINGTQDLAL EKKEIKKEIT 180 SLDKVEAGLQ KARLAIKQSQ SGNQTLDDPQ YVPTGPMYWN ARAFHASYRE MEKQFKVFVY 240 EEGEPPVFHN GPCKSIYAME GNFIHGMEID PKFRTKDPDK AHMFFLPFSV AMLVQFVYVR 300 DSHDFGPIRR TVADYVELVA KKYPYWNRSL GADHFMLACH DWGPEASFSV PFLGKNSIRA 360 LCNANTSERV NPVKDVSFPE INLRTGTTTG FIGGPSPSKR SILAFFAGGL HGPIRPILLQ 420 HWEKKNDEDV RVHQYLPKGI SYYDMMRKSK FCLCPSGYEV ASPRVVEAIY AGCVPVLISD 480 HYVPPFSDVL NWKAFSVEVS VSEIPNLKTI LEGISTRQYI RMQRRVLQVR RHFEVNSPAR 540 RYDVFHMILH SIWLRRLNVR IQGDQLAAIT S* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-68 | 231 | 514 | 301 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB08605.1 | 0 | 146 | 562 | 3 | 406 | unnamed protein product [Arabidopsis thaliana] |
RefSeq | NP_001031828.1 | 0 | 146 | 562 | 113 | 516 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002284018.1 | 0 | 231 | 562 | 1 | 331 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326234.1 | 0 | 231 | 559 | 1 | 328 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528630.1 | 0 | 91 | 571 | 100 | 574 | catalytic, putative [Ricinus communis] |