y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G25310.1 |
Family | GT47 |
Protein Properties | Length: 481 Molecular Weight: 55974 Isoelectric Point: 9.2193 |
Chromosome | Chromosome/Scaffold: 5 Start: 8784820 End: 8787366 |
Description | exostosin family protein, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 148 | 432 | 0 |
EKRFKVYVYEEGEPPLVHDGPCKSVYAVEGRFITEMEKRRTKFRTYDPNQAYVYFLPFSVTWLVRYLYEGNSDAKPLKTFVSDYIRLVSTNHPFWNRTNG ADHFMLTCHDWGPLTSQANRDLFNTSIRVMCNANSSEGFNPTKDVTLPEIKLYGGEVDHKLRLSKTLSASPRPYLGFFAGGVHGPVRPILLKHWKQRDLD MPVYEYLPKHLNYYDFMRSSKFCFCPSGYEVASPRVIEAIYSECIPVILSVNFVLPFTDVLRWETFSVLVDVSEIPRLKEILMSI |
Full Sequence |
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Protein Sequence Length: 481 Download |
MDKFQSKFTR FGFISICFGS IALVLLISHC STSFFDYSFQ KFKFSFPEET ELRRNVYTSS 60 SGEENRVVVD SRHVSQQILT VRSTNSTLQS KPEKLNRRNL VEQGLAKARA SILEASSNVN 120 TTLFKSDLPN SEIYRNPSAL YRSYLEMEKR FKVYVYEEGE PPLVHDGPCK SVYAVEGRFI 180 TEMEKRRTKF RTYDPNQAYV YFLPFSVTWL VRYLYEGNSD AKPLKTFVSD YIRLVSTNHP 240 FWNRTNGADH FMLTCHDWGP LTSQANRDLF NTSIRVMCNA NSSEGFNPTK DVTLPEIKLY 300 GGEVDHKLRL SKTLSASPRP YLGFFAGGVH GPVRPILLKH WKQRDLDMPV YEYLPKHLNY 360 YDFMRSSKFC FCPSGYEVAS PRVIEAIYSE CIPVILSVNF VLPFTDVLRW ETFSVLVDVS 420 EIPRLKEILM SISNEKYEWL KSNLRYVRRH FELNDPPQRF DAFHLTLHSI WLRRLNLKLT 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 5.0e-62 | 147 | 432 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0012505 | endomembrane system |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21064.1 | 0 | 82 | 479 | 75 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197913.4 | 0 | 1 | 480 | 1 | 480 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002285237.1 | 0 | 147 | 479 | 1 | 333 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324871.1 | 0 | 147 | 480 | 1 | 334 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515489.1 | 0 | 16 | 479 | 17 | 480 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |