y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra009831 |
Family | GT47 |
Protein Properties | Length: 481 Molecular Weight: 55970.1 Isoelectric Point: 9.2346 |
Chromosome | Chromosome/Scaffold: 06 Start: 17575116 End: 17577520 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 148 | 432 | 0 |
EKRFKVYVYEEGEPPLVHDGPCKSVYAVEGRFIMEMEKSRTKFRTYDPDQAHVYFLPFSVTWLVTYLYQYNYDAEPLRTFASDYVRLISSKHPFWNRTSG ADHFMLACHDWGPLTSKANEDLFHKSIRVMCNANSSEGFNPAKDATLPEIKLYGGEVHPQLRLSKILMTSPRPHLAFFAGGVHGPVRPILLDHWKQRDPD MPVFEYLPKHLNYYDFMRSSKFCFCPSGYEVASPRLIEAIYSECIPVILSVNFVLPFSDILRWETFSVQVDVSEIPRLKEILTSI |
Full Sequence |
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Protein Sequence Length: 481 Download |
MDKHQYTRFC FLSICIGSIA LVFAISRCSI SFFDYSLQKL EFSFPESELR RSFYNAGDEN 60 RAVDSRDVVS QQILSVRSRN DTLQSKPEKK KKKLNRRRTV EVGLSKARAS IREAASSNRN 120 ATLFSVDLPN AQVYRNPSAL SQSYLEMEKR FKVYVYEEGE PPLVHDGPCK SVYAVEGRFI 180 MEMEKSRTKF RTYDPDQAHV YFLPFSVTWL VTYLYQYNYD AEPLRTFASD YVRLISSKHP 240 FWNRTSGADH FMLACHDWGP LTSKANEDLF HKSIRVMCNA NSSEGFNPAK DATLPEIKLY 300 GGEVHPQLRL SKILMTSPRP HLAFFAGGVH GPVRPILLDH WKQRDPDMPV FEYLPKHLNY 360 YDFMRSSKFC FCPSGYEVAS PRLIEAIYSE CIPVILSVNF VLPFSDILRW ETFSVQVDVS 420 EIPRLKEILT SISDEKYQSL KRNLRYVRRH FELNDPPKRY DAFHMILHSI WLRRLNLRLT 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-63 | 147 | 432 | 307 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21064.1 | 0 | 77 | 479 | 75 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197913.4 | 0 | 1 | 480 | 1 | 480 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002285237.1 | 0 | 147 | 479 | 1 | 333 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324871.1 | 0 | 147 | 480 | 1 | 334 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515489.1 | 0 | 4 | 479 | 6 | 480 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |