y
Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000302259 |
Family | CBM43 |
Protein Properties | Length: 544 Molecular Weight: 59748.9 Isoelectric Point: 7.0115 |
Chromosome | Chromosome/Scaffold: 017977431 Start: 10436 End: 15998 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 282 | 364 | 1.9e-33 |
CVAKADADPDKLQDGLNWACGQGGANCTPIQKGQRCYLPDSIVNHASYAFNDYYQKMQSAGGTCDFDGTAMTTTVDPSHGACK | |||
GH17 | 1 | 240 | 0 |
MLKALSNSGIEVMVGVTNEEVLGIGESASAAAAWINKNVAAYLPSTNITAIAVGSEVITTIPNAAPVLVSAMNYLHKALVASNLNFQIKVSTPQSMDIIP KPFPPSTATFNYSWGPTIYRILQFIKNTNSYYMLNAYPYYGYTSGDGIFPLDYALFRPLPSVKQIVDPNTLFHYNSMFDAMVDATYYSIEDFNFSGISVV VTETGWPWFGGSKEPDANTGNAQTYTNNLIQRVLNGSGPP |
Full Sequence |
---|
Protein Sequence Length: 544 Download |
MLKALSNSGI EVMVGVTNEE VLGIGESASA AAAWINKNVA AYLPSTNITA IAVGSEVITT 60 IPNAAPVLVS AMNYLHKALV ASNLNFQIKV STPQSMDIIP KPFPPSTATF NYSWGPTIYR 120 ILQFIKNTNS YYMLNAYPYY GYTSGDGIFP LDYALFRPLP SVKQIVDPNT LFHYNSMFDA 180 MVDATYYSIE DFNFSGISVV VTETGWPWFG GSKEPDANTG NAQTYTNNLI QRVLNGSGPP 240 SQPKLPIQHV HLRVVQRRSE ARASVREKLG CVLYKWVCWV FCVAKADADP DKLQDGLNWA 300 CGQGGANCTP IQKGQRCYLP DSIVNHASYA FNDYYQKMQS AGGTCDFDGT AMTTTVDPSH 360 GACKFSGSEE TGASKMTTPS APSLASSSRW ASTTSVSSSG KRIQREMVEL NMDPPPDCCA 420 GPKGDNLYHW IATLFGPPGT PYHGGIYFLD ITFPSDYPFK PPKVVFTTRI YHCNVDSNGN 480 LSMEMLKDSW SPALTITKLL LAIRSIFTRP DPYNPLVPSI ARLYLEDKAK HDELASEWTL 540 RFAK 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 2.0e-52 | 2 | 247 | 246 | + Glycosyl hydrolases family 17. | ||
pfam00179 | UQ_con | 1.0e-53 | 402 | 539 | 139 | + Ubiquitin-conjugating enzyme. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. | ||
cd00195 | UBCc | 2.0e-54 | 401 | 539 | 140 | + Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. | ||
COG5078 | COG5078 | 2.0e-54 | 401 | 544 | 145 | + Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | ||
PLN00172 | PLN00172 | 2.0e-56 | 401 | 543 | 143 | + ubiquitin conjugating enzyme; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016881 | acid-amino acid ligase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01763.1 | 0 | 1 | 379 | 28 | 424 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
EMBL | CAN72077.1 | 0 | 1 | 388 | 64 | 468 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283548.1 | 0 | 1 | 365 | 64 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283548.1 | 0 | 390 | 544 | 522 | 676 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297638.1 | 0 | 1 | 368 | 28 | 411 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1y6l_C | 0 | 397 | 543 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
PDB | 1y6l_B | 0 | 397 | 543 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
PDB | 1y6l_A | 0 | 397 | 543 | 2 | 148 | A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 |
PDB | 3bzh_A | 0 | 396 | 543 | 46 | 193 | A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 |
PDB | 1z2u_A | 0 | 401 | 543 | 7 | 149 | A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significa |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
BG648951 | 248 | 1 | 248 | 0 |
DV150956 | 240 | 1 | 240 | 0 |
DV161369 | 233 | 1 | 233 | 0 |
CF230440 | 235 | 37 | 271 | 0 |
EX249224 | 194 | 55 | 248 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|